Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., HTH-type transcriptional regulator SgrR from Serratia liquefaciens MT49

 Score =  368 bits (944), Expect = e-106
 Identities = 206/563 (36%), Positives = 317/563 (56%), Gaps = 16/563 (2%)

Query: 1   MSSPRLRVQFETLFEHFQGQDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAG 60
           MS+ RL+ QF  L++   G+  ET L+++ ++L C+RR+ R +L  M+++GW+ W   +G
Sbjct: 1   MSTSRLQQQFIRLWQRCHGEPTETTLQELAEVLSCSRRHVRSLLGAMQQQGWLTWQAESG 60

Query: 61  RGKLSQLIFKRSRADVSENLARRYLNEGKIGQAFAVLDQDAAKLTQVIESYLGVQHQEGL 120
           RGK SQL F  +   + +  A   L + +I Q   ++  D   + Q++ S LG   ++G 
Sbjct: 61  RGKRSQLTFHYTGLALQQQRAEELLEQDRIDQLVQLVG-DKNVVRQMLLSQLGRSFRQGK 119

Query: 121 QVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEE-QLQPDLAHAWQALSDTH 179
            ++R+ YYRQL  L P   +RRSE H+ARQ+FSGLTR++EE  +L+ DL+H WQAL+  H
Sbjct: 120 HILRVLYYRQLYNLLPGSALRRSETHLARQIFSGLTRINEENGELESDLSHHWQALTPLH 179

Query: 180 WRFYLRPGVRFHNGNLLTTELIVQNLWQLRLLNLFAHIDRVDSPYPWAVDVHLQKPDTRL 239
           WRFYLRP + FH+G  L  E ++ +L +L    LF+HI+RV SP P+ +DVHL  PD  L
Sbjct: 180 WRFYLRPAIHFHHGRELEMEDVISSLSRLMPQPLFSHIERVTSPTPYVIDVHLHSPDYWL 239

Query: 240 PLLLAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLVLQAFDGYFGFRPLLDRV 299
           P LL    A ILP E    P+F   PVGTGPY VV N   ++ + AFD YFG+R L+D V
Sbjct: 240 PWLLGSVHAMILPREWQSLPEFSRHPVGTGPYSVVRNHRSQMKIHAFDDYFGYRALIDEV 299

Query: 300 EVWVIDEVHSSMVFPSLSNPMKTARGSSTEEVELDPGCTYLLLNRRNGVAKDEHWARYLT 359
            +WV+ EV   +V   +        G +  E  L+ GC +LL ++R+ +A D     +L 
Sbjct: 300 NIWVLPEVTEELVHSGVQLQADDT-GKNELESRLEEGCYFLLFDQRSPLAADPVIRSWLC 358

Query: 360 DKLNALNLFRLLPEEKIIELGVLPAYGLKPGWYHHSAAAQRTLPPESKELTIAYHAQHPM 419
           + +N ++L  L     + +    PAYG+ P W+H+ A A +  P    ELT+ Y+++H  
Sbjct: 359 ELINPISL--LSNAGPVYQRYWSPAYGILPRWHHNRALALQPKPAGLTELTLTYYSEHSE 416

Query: 420 FPTVANAIKQLLSQDGITVN--VIKYEHTVVETENVDIWIKPMGIANHRDDALAGWLLNY 477
           F  +  AI+ LL+Q GI +N  ++ Y        + D+W+         + +L   L   
Sbjct: 417 FHAIQQAIEPLLAQHGIKLNIQIVDYATWHKGDASTDLWLGSANFYLPLEFSLFATLYEL 476

Query: 478 SDIEFLSKGEDFNQWVSLIDAWRADSSALFPAKELGKSLVEKHQLIPMFHCWLGISKDQC 537
             ++     ED ++  +L   WRA++    P  +  + LV  HQL P+FH WL +   + 
Sbjct: 477 PLMQH-CMSEDLSEDAAL---WRANA---LPLADFCQRLVSGHQLHPLFHHWLQLHGQR- 528

Query: 538 GALQNAKCNALGWFDFSQVWVKP 560
            +++  + N LGWFDF   W  P
Sbjct: 529 -SMRGVRMNTLGWFDFKSAWFAP 550