Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  311 bits (798), Expect = 3e-89
 Identities = 185/564 (32%), Positives = 292/564 (51%), Gaps = 19/564 (3%)

Query: 1   MSSPRLRVQFETLFEHFQGQDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAG 60
           M S RL+ QF  L++   G+  +T L ++ D+L C+RR+ R +LN M+  GW+ W    G
Sbjct: 1   MPSGRLQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLLNTMQARGWLTWEAEVG 60

Query: 61  RGKLSQLIFKRSRADVSENLARRYLNEGKIGQAFAVLDQDAAKLTQVIESYLGVQHQEGL 120
           RGK S+L F  +   + +  A   L + +I Q   ++  D + + Q++ S+LG   ++G 
Sbjct: 61  RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVG-DKSAVRQMLISHLGRSFRQGR 119

Query: 121 QVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEE-QLQPDLAHAWQALSDTH 179
            ++R+ YYR +  L P   +RRSE HIARQ+FS LTR++EE  +L+ D+AH WQ +S   
Sbjct: 120 HILRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEENGELEADIAHHWQQISPLL 179

Query: 180 WRFYLRPGVRFHNGNLLTTELIVQNLWQLRLLNLFAHIDRVDSPYPWAVDVHLQKPDTRL 239
           WRFYLRPG+ FH+G  L  E ++ +L ++  L L++HI ++DSP  W +D+HL +PD  L
Sbjct: 180 WRFYLRPGIHFHHGRELEMEDVISSLTRINTLPLYSHITKIDSPTAWTLDIHLSQPDRWL 239

Query: 240 PLLLAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLVLQAFDGYFGFRPLLDRV 299
           P LL +  A ILP + +   +F   P+GTGPY V  N   +L + AFD YFG+R L+D V
Sbjct: 240 PWLLGQVPAMILPRKWETLANFASHPIGTGPYAVRRNTPNQLKILAFDDYFGYRALIDEV 299

Query: 300 EVWVIDEVHSSMVFP-SLSNPMKTARGSSTEEVELDPGCTYLLLNRRNGVAKDEHWARYL 358
            VWV+ ++         L  P++   G    E  L+ GC YLL + R           ++
Sbjct: 300 NVWVLPDISEEPACGLMLEGPIQ--GGEKAIESRLEEGCYYLLFDARTPRGAHPQVREWV 357

Query: 359 TDKLNALNLFRLLPEEKIIELGVLPAYGLKPGWYHHSAAAQRTLPPESKELTIAYHAQHP 418
           +  L+  NL  L   ++ ++    PAYGL P W HH+       P   + LT+ ++ +H 
Sbjct: 358 SHVLSPTNL--LYHADEPLQQLWFPAYGLLPRW-HHARPGPGEKPAGLETLTLTFYREHI 414

Query: 419 MFPTVANAIKQLLSQDGITVNV--IKYEHTVVETENVDIWIKPMGIANHRDDALAGWLLN 476
               +A  +  LL++  + +++  I Y+         DIW+         D +L   L  
Sbjct: 415 EHRVIARIMSALLAEHQVHLHIQEIDYDQWHAGEIESDIWLNSANFTLPLDFSLFAHLCE 474

Query: 477 YSDIEFLSKGEDFNQWVSLIDAWRADSSALFPAKELGKSLVEKHQLIPMFHCWLGISKDQ 536
              ++          W      WRA    L       + L+    ++P+ H WL I   +
Sbjct: 475 VPLLQNCIP----RDWQGDAAQWRAGEMNL---ANWCQQLLANKAIVPLIHHWLIIQGQR 527

Query: 537 CGALQNAKCNALGWFDFSQVWVKP 560
             +++  + N LGWFDF   W  P
Sbjct: 528 --SMRGLRMNTLGWFDFKSAWFAP 549