Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 566 a.a., predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  178 bits (451), Expect = 6e-49
 Identities = 147/571 (25%), Positives = 252/571 (44%), Gaps = 39/571 (6%)

Query: 9   QFETLFEHFQGQDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAGRGKLSQLI 68
           Q++ L++   G+     + ++ +  FC+ R+ R +L + +E GW+EW   +GRGK  QL 
Sbjct: 9   QYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLR 68

Query: 69  FKRSRADVSENLARRYLNEGKIGQAFAVLDQDAAKLTQVIESYLGVQHQEGLQVVRLPYY 128
           F  +   +   +  + L  GK      +      +L  +++ ++G Q Q     +R+PYY
Sbjct: 69  FLVTPESLRNAMMEQALETGKQQDVLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYY 128

Query: 129 RQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEEQLQ-PDLAHAWQALSD-THWRFYLRP 186
           R L  L P     R+EQH+A Q+FSGLTR D   Q    DLAH W+  +D   W FYLR 
Sbjct: 129 RPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYLRS 188

Query: 187 GVRFHNGNLLTTELIVQNLWQLRLL----NLFAHIDRVDSPYPWAVDVHLQKPDTRLPLL 242
            + +HNG+ +    + Q L  L  L     LF  + R++  +P  +   L +PD  L   
Sbjct: 189 TLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHR 248

Query: 243 LAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLVLQAFDGYFGFRPLLDRVEVW 302
           LA  C+ +       +P F L  +GTGP+++     + + L++ D Y    PLL  VE W
Sbjct: 249 LASYCSHL------AHPQFPL--IGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYW 300

Query: 303 VIDEVHSSMVFPSLSNPMKTARGSSTE-----EVELDPGCTYLLLNRRNGVAKDEHWARY 357
           +   +    +  S  +P++   G   E     +V       +  L  R         AR 
Sbjct: 301 ITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARK 360

Query: 358 LTDKLNALNLFRLLPEEKIIELGVLPAYGLKPGWY--HHSAAAQRTLPPESKELTIAYHA 415
           +   ++   L + L   ++ E  +  ++ L PGW   H     +  LP   K LT+ YH 
Sbjct: 361 VISIIHQSGLLQTL---EVGENLITASHALLPGWTIPHWQVPDEVKLP---KTLTLVYHL 414

Query: 416 QHPMFPTVANAIKQLLSQDGITVNVI-----KYEHTVVETENVDIWIKPMGIANHRDDAL 470
              +  T+A  ++  L+ +G  + +I      ++ T ++  + D+ +    I    +  L
Sbjct: 415 PIELH-TMAERLQATLAAEGCELTIIFHNAKNWDDTTLQA-HADLMMGDRLIGEAPEYTL 472

Query: 471 AGWLLNYSDIEFLSKGEDFNQWVSLIDAWR--ADSSALFPA-KELGKSLVEKHQLIPMFH 527
             WL        +     +    S +DA +   D    F A K +   L+    L P+F+
Sbjct: 473 EQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEENRFNALKAVFSQLMTDATLTPLFN 532

Query: 528 CWLGISKDQCGALQNAKCNALGWFDFSQVWV 558
               IS      +   +    GWF+F++ W+
Sbjct: 533 YHYRISAPP--GVNGVRLTPRGWFEFTEAWL 561