Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score =  329 bits (843), Expect = 2e-94
 Identities = 191/564 (33%), Positives = 304/564 (53%), Gaps = 20/564 (3%)

Query: 1   MSSPRLRVQFETLFEHFQGQDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAG 60
           M S RL+ QF  L++  +G+  +T L ++  +L C+RR+ R +LN M++ GW+ W    G
Sbjct: 1   MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG 60

Query: 61  RGKLSQLIFKRSRADVSENLARRYLNEGKIGQAFAVLDQDAAKLTQVIESYLGVQHQEGL 120
           RGK S+L F  +   + +  A   L + +I Q   ++  D A + Q++ S+LG   ++G 
Sbjct: 61  RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVG-DKATVRQMLVSHLGRSFRQGR 119

Query: 121 QVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEE-QLQPDLAHAWQALSDTH 179
            ++R+ YYR L  L P   +RRSE HIARQ+FS LTR++EE  +L+ D+AH WQ +S  H
Sbjct: 120 HILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLH 179

Query: 180 WRFYLRPGVRFHNGNLLTTELIVQNLWQLRLLNLFAHIDRVDSPYPWAVDVHLQKPDTRL 239
           WRF+LRPGV FH+G  L  + ++ +L ++  L L++HI  + SP PW +D+HL +PD  L
Sbjct: 180 WRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWL 239

Query: 240 PLLLAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLVLQAFDGYFGFRPLLDRV 299
           PLLL +  A ILP E +   +F   P+GTGPY V+ N   +L +QAFD +FG+R L+D V
Sbjct: 240 PLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEV 299

Query: 300 EVWVIDEVHSSMVFPSLSNPMKTARGSSTE-EVELDPGCTYLLLNRRNGVAKDEHWARYL 358
            VWV+ E+      P+    +K  +G   E E  L+ GC YLL + R     ++    ++
Sbjct: 300 NVWVLPEIADE---PAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWV 356

Query: 359 TDKLNALNLFRLLPEEKIIELGVLPAYGLKPGWYHHSAAAQRTLPPESKELTIAYHAQHP 418
           +  L+  NL     EE+  +L   PAYGL P W HH+   +   P   + LT+ ++  H 
Sbjct: 357 SYVLSPTNLV-YFAEEQYQQLW-FPAYGLLPRW-HHARTIKSEKPAGLESLTLTFYQDHS 413

Query: 419 MFPTVANAIKQLLSQDGITVNVIKYEHTVVETENV--DIWIKPMGIANHRDDALAGWLLN 476
               +A  ++Q+L+   +T+ + + ++    T  +  DIW+         D ++   L  
Sbjct: 414 EHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCE 473

Query: 477 YSDIEFLSKGEDFNQWVSLIDAWRADSSALFPAKELGKSLVEKHQLIPMFHCWLGISKDQ 536
              ++     +    W +    WR     L       + LV    ++P+ H WL I   +
Sbjct: 474 VPLLQHCIPID----WQADAARWRNGEMNL---ANWCQQLVASKAMVPLLHHWLIIQGQR 526

Query: 537 CGALQNAKCNALGWFDFSQVWVKP 560
             +++  + N LGWFDF   W  P
Sbjct: 527 --SMRGLRMNTLGWFDFKSAWFAP 548