Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., HTH-type transcriptional regulator SgrR from Erwinia tracheiphila SCR3

 Score =  348 bits (892), Expect = e-100
 Identities = 193/563 (34%), Positives = 311/563 (55%), Gaps = 16/563 (2%)

Query: 1   MSSPRLRVQFETLFEHFQGQDVETQLEDVTDILFCTRRNARIVLNKMEEEGWIEWHPAAG 60
           MSSPRL+ QF  L++  +GQ  +T L D+   L C+RR+ R +LN M+++GW+EWH  AG
Sbjct: 1   MSSPRLKQQFIRLWQSCEGQSQQTTLNDLALRLNCSRRHMRSLLNAMQQQGWLEWHAEAG 60

Query: 61  RGKLSQLIFKRSRADVSENLARRYLNEGKIGQAFAVLDQDAAKLTQVIESYLGVQHQEGL 120
           R K SQL F  +   + +  A   L + +I Q   ++  D   + Q++ S LG   ++G 
Sbjct: 61  RSKRSQLNFLYTGLALQQQRAEDLLEQDRIDQLVQLVG-DKNAVRQMLVSRLGRSFRQGK 119

Query: 121 QVVRLPYYRQLSMLNPQKPMRRSEQHIARQVFSGLTRLDEEE-QLQPDLAHAWQALSDTH 179
            ++R+ YYR L  L P  P+RRSE H+ARQ+FSGLTR++EE  +++ D+AH WQ ++  H
Sbjct: 120 HILRILYYRSLLNLLPGTPLRRSETHLARQIFSGLTRINEENGEIEADIAHHWQQITPLH 179

Query: 180 WRFYLRPGVRFHNGNLLTTELIVQNLWQLRLLNLFAHIDRVDSPYPWAVDVHLQKPDTRL 239
           WRF+LRP + FH+G  L    ++  L +L    L+A++ ++ S  PW++D++L +PD  L
Sbjct: 180 WRFFLRPAIHFHHGRELEMADVIATLERLTSQPLYANLHKISSSSPWSLDIYLHQPDHWL 239

Query: 240 PLLLAEACAKILPAESDRNPDFDLMPVGTGPYKVVLNDEKRLVLQAFDGYFGFRPLLDRV 299
           P LL    + ILP E     +F   P+GTGPY+VV N +++L ++AFD YFG+R L+D V
Sbjct: 240 PWLLGSVSSMILPKEWPSIANFARQPIGTGPYQVVRNQQRQLRIEAFDDYFGYRALIDEV 299

Query: 300 EVWVIDEVHSSMVFPSLSNPMKTARGSSTEEVELDPGCTYLLLNRRNGVAKDEHWARYLT 359
            +WV+ E+   +V+ S+      +    +EE  L+ GC +LL ++R+   ++E   R++ 
Sbjct: 300 NIWVLPEISEELVYASV-RLQSDSLSDKSEESRLEEGCYFLLFDQRSERGRNEQVRRWVN 358

Query: 360 DKLNALNLFRLLPEEKIIELGVLPAYGLKPGWYHHSAAAQRTLPPESKELTIAYHAQHPM 419
              N + L  L   +   +    PAYGL P W+H     + T P     LT+ ++  H  
Sbjct: 359 SLCNPVAL--LNQADIGYQRYWFPAYGLLPRWHHQRDLTRSTKPAGLTSLTLTWYDDHIE 416

Query: 420 FPTVANAIKQLLSQDGITVNVIKYEHTVVETENV--DIWIKPMGIANHRDDALAGWLLNY 477
           +  +AN ++ LL+  G+T+   + ++      +   DIW   +G AN             
Sbjct: 417 YQAIANTLEPLLAAGGVTLVTRQVDYATWHRGDAESDIW---LGSANFTLPLAFSLFALL 473

Query: 478 SDIEFLSKGEDFNQWVSLIDAWRADSSALFPAKELGKSLVEKHQLIPMFHCWLGISKDQC 537
            +I  +      N W + +  WR ++  L    E  K +++ H L P+FH WL +  +  
Sbjct: 474 YEIPLVHHCVATN-WETDVQKWRENNLTL---TEWSKRIIDSHTLHPLFHHWLLL--EGI 527

Query: 538 GALQNAKCNALGWFDFSQVWVKP 560
             +++ K N LGWFDF   W  P
Sbjct: 528 RTMRDVKMNTLGWFDFKSAWFAP 550