Pairwise Alignments

Query, 565 a.a., SgrR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score = 55.1 bits (131), Expect = 7e-12
 Identities = 78/341 (22%), Positives = 134/341 (39%), Gaps = 35/341 (10%)

Query: 134 LNPQKPMRRSEQHIARQVFSGLTRLDEEEQLQPDLAHAWQALSD-THWRFYLRPGVRFHN 192
           L+P        Q +A+  + GL  LD+E +L+  LA  +    D   +   LR GV+F +
Sbjct: 41  LDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAEGYTVSEDGLVYTIKLRTGVKFQD 100

Query: 193 GNLLTTELIVQNLWQ-------LRLLNLFAHIDRVDSPYPWAVDVHLQKPDTRLPLLLAE 245
           G     E +  NL +       L+  NL+ +I   +   P  V + L++P +    +LA 
Sbjct: 101 GTDFNAEAVKVNLDRASNPENSLKRYNLYKNIASTEVVDPATVKITLKEPFSAFINILAH 160

Query: 246 -ACAKILPAESDR-NPDFDLMPVGTGPYKVVL-NDEKRLVLQAFDGYF----------GF 292
            A A I PA   +   +    PVGTGPY+++  N    + ++ F GY+           +
Sbjct: 161 PATAMISPAALKKYGKEIGFHPVGTGPYELLTWNQTDFVKVKKFAGYWQQGLPKLDTITW 220

Query: 293 RPLLD-RVEVWVIDEVHSSMVFPSLSNPMKTARGSSTEEVELDPGC--TYLLLNRRNGVA 349
           RP++D      ++    +   FP         + +S  E+   P     Y+ +N      
Sbjct: 221 RPVVDNNTRAAMLQTGEAQFAFPIPYEQAAILQKNSKLELVASPSIMQRYISMNVTQKPF 280

Query: 350 KDEHWARYLTDKLNALNLFRL------LPEEKIIELGVLPAYGLKPGWYHHSAAAQRTLP 403
            +      +   +N   L ++       P   ++   +  A   +P W +  A A+  L 
Sbjct: 281 DNPKVREAINYAINRQALVKVAFAGYATPATGVLPPAIAYAQSYQP-WPYDPAKARELLK 339

Query: 404 ----PESKELTIAYHAQHPMFPTVANAIKQLLSQDGITVNV 440
               P     T+     H     V    +Q L+Q GI V V
Sbjct: 340 EAGFPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKVQV 380