Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

 Score =  215 bits (547), Expect = 2e-60
 Identities = 123/390 (31%), Positives = 210/390 (53%), Gaps = 17/390 (4%)

Query: 5   SLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRNDDAG 64
           +L+V  ++  +S  AF++N  ++ARG  MG  GV + ++L  P+YNPAL A+YR+ND  G
Sbjct: 8   TLAVVMAMAFSSS-AFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAVYRKNDSFG 66

Query: 65  MILPSIGLSYNDPNDLITDLDKVSDIINQSSK-----GDYSNIGELNKSLTAMQGDVLNA 119
           ++LPSIGL   D ++ +  +D + D I Q  +         N+ +LN+ L  +  D   A
Sbjct: 67  ILLPSIGLRAEDKDESLKTIDDLQDSIEQFERAGVGAATQENVDQLNRYLDQLADDKPLA 126

Query: 120 ELGGV-VAFAIPNQFISANVFGKAYTESFVSPIIDSRVCADDLCELERAKASSVNAVSVG 178
              G+ +A A+P   +S N F + Y E      + ++          R ++S V+  + G
Sbjct: 127 VTAGIGIAVALPLDAVSLNFFTRGYAEVIAKANVAAKSGNSANEVKTRYESSDVDLTAFG 186

Query: 179 ITELGITLAKYQTFLGQHIAFGITPKLQRVYTYVYEASLNSYDIKDLRDNGNGETIFNMD 238
            TE+G+ + K     GQ +A G+TPK+Q++ TY   AS+ S+D+ D   +   +  FN+D
Sbjct: 187 YTEVGLAVGKQVVLGGQTVALGVTPKVQQLRTYQDNASVKSFDLDDYDKSEVKDNSFNLD 246

Query: 239 AGALWFYGPIRIGFAANNLISREIKTKTITSAVSGNPISYSYDMKPQYTVGAGIVADYFT 298
            GA+W     R+G  A +L +++I+T+   +         +Y +  Q  V    V+D+F 
Sbjct: 247 MGAVWLIDQYRVGIVAKDLFAKDIQTQNRNN---------TYKLDTQIAVSGSYVSDFFI 297

Query: 299 LSVDYDLNEEERYKDFKDNTQMIRVGGEIDIMRQLKLRAGYNKNLAYDNTEGTVTAGIGL 358
            +VD DL ++ R+    D+TQ +R G E +     +LRAGY  +L  ++ + +V+ G+G+
Sbjct: 298 AAVDLDLTKQRRFNGDNDDTQFMRFGVEGNAWGWAQLRAGYEVDL-QNSLDNSVSVGLGV 356

Query: 359 SPLNLFQLDLGASYTNENAMGAYINFLASY 388
           SP ++  LDL  SY  +N  G   N   ++
Sbjct: 357 SPWDVVSLDLAGSYAGDNQFGLSANLAFTF 386