Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., F plasmid transfer operon, TraF, protein from Enterobacter asburiae PDN3

 Score =  168 bits (425), Expect = 3e-46
 Identities = 125/423 (29%), Positives = 209/423 (49%), Gaps = 52/423 (12%)

Query: 6   LSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRNDDAGM 65
           +S+  SL + +  A +AN   E+R DAMGG GV +G++ +G   NPAL+A  + +DD  +
Sbjct: 10  VSIAVSLFMANQ-AGAANTWTESRSDAMGGTGVAAGSYGSGALINPALLAKAKPDDDVTV 68

Query: 66  ILPSIGLSYNDPNDLITDLDKVSDIINQ--------SSKGDYSN-IGELNK--------- 107
           ILPS+G+   D ++L  ++D ++D IN         + +   +N +G +N+         
Sbjct: 69  ILPSVGVQVTDEDNLQDEIDTINDKINHYKDVVDDLTPRDIITNPLGSINQFQGAAKDLA 128

Query: 108 -SLTAMQGDVLNAELGGVVAFAIPNQFISANVFGKAYTESFVSPIIDSRVCADDLCELER 166
             L  ++G    A  G  +A +IPN  +S     K Y    VS  ID +   D L  +++
Sbjct: 129 DELDYLKGKTARATAGAGLAVSIPNDVLSVAFMAKGYAHGRVSSSIDQQ-DIDYLRGIQQ 187

Query: 167 AK------------------ASSVNAVSVG----ITELGITLAKYQTFLGQHIAFGITPK 204
           +K                    ++N+ + G    +++ G+ +A+     G  ++ G+TPK
Sbjct: 188 SKVVAAGVALDAALNGTDQITKNLNSTASGRAAIVSDYGVAVARQFDLGGVPVSVGVTPK 247

Query: 205 LQRVYTYVYEASLNSYDIKDLRDN--GNGETIFNMDAGALWFYGP-IRIGFAANNLISRE 261
           LQ+ + Y Y  S+  YD     D+     +T FN+DAG    +G    +G +  NL+SR+
Sbjct: 248 LQKTWVYNYTTSIYDYDSNKWNDSRYRTDDTGFNVDAGIAADFGEHWTVGVSGQNLMSRD 307

Query: 262 IKTK--TITSAVSGNPISY--SYDMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDN 317
           I TK   I +  +G  +SY  +Y ++P  T GA    D  TL+ D DL E + +K  +D 
Sbjct: 308 IDTKDIRIRNGRTGEVVSYKDTYQIRPLVTAGAAWHNDLVTLTADGDLTETKGFKS-EDT 366

Query: 318 TQMIRVGGEIDIMRQLKLRAGYNKNLAYDNTEGTVTAGIGLSPLNLFQLDLGASYTNENA 377
           +Q + VG E+  +  L +RAGY  ++   N     T G+G +P +   +DL   Y  +  
Sbjct: 367 SQYVGVGAEVTPLSWLAVRAGYRADVK-GNDSNVFTGGVGFAPFSTVHVDLMGLYGEDET 425

Query: 378 MGA 380
            GA
Sbjct: 426 WGA 428