Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., conjugal transfer protein TraF from Dickeya dianthicola ME23

 Score =  160 bits (405), Expect = 6e-44
 Identities = 124/408 (30%), Positives = 192/408 (47%), Gaps = 47/408 (11%)

Query: 2   KRISLSVGFSLVLTSPLAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRND 61
           K I+ ++  +L      A +A    +AR DAMGG GV S ++ +    NPAL+  +  ND
Sbjct: 4   KYITHAIIAALATLPVAAMAAGTWSDARNDAMGGTGVASSHYGSAALVNPALLTKFNSND 63

Query: 62  DAGMILPSIGLSYNDPNDLITDLDKVSDIINQSSKGDYSNIGELNKSLTAMQGDVLNA-- 119
              +ILPSIG + ++P+ +    D V     ++S   Y      N + TA   ++ NA  
Sbjct: 64  HISLILPSIGATVSNPDKIEDKFDSV-----KNSWDSYKQATAFNTNTTASAQNLKNAFQ 118

Query: 120 ELGG---------VVAFAIPNQFI----SANVFGKAYTESFVS----PIIDSRVCADDLC 162
           ++ G           A ++PN  +    +A  +G A  ++ V+      +DS +      
Sbjct: 119 DISGKGGSADAAFSTAISVPNTTLPFAFTAKAWGVASAKATVTDNDLAYLDSVIAGRTPT 178

Query: 163 ELE-RAKASSVNAVSVGITELGITLAKYQTFLGQHIAFGITPKLQRVYTYVYEASLNSYD 221
             +  +  S  +     +TE GI+ AK     G+ ++ G+TPKLQ+VY Y Y   +N+Y 
Sbjct: 179 SADLNSLTSRADGAGAIVTEYGISAAKSFALAGKTVSVGMTPKLQQVYLYNYNVGINNYS 238

Query: 222 IKDLRDN--------GNGETIFNMDAGALWFYGPIRIGFAANNLISREIKTKTITSAVSG 273
             D R++        GN +  F MD    W      +G    NL++R I +K +      
Sbjct: 239 SSDFRNSEFKSSESGGNIDVGFAMDLTPNW-----TVGLVGQNLVARSIDSKEV------ 287

Query: 274 NPISYSYDMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQMIRVGGEIDIMRQL 333
           N I  +++++PQ TVG        TL+ D DL     +   K N Q   VG E++     
Sbjct: 288 NGIKRTFEIRPQATVGTAWTNGTVTLATDVDLTPASGFSGEKKN-QYAGVGAELNAWNWA 346

Query: 334 KLRAGYNKNLAYDNTEGTVTAGIGLSPLNLFQLDL-GASYTNENAMGA 380
           +LRAGY  NL  D+    +TAG+GLSP NL  LDL G   T+ N  GA
Sbjct: 347 QLRAGYRANLK-DSDRSLITAGVGLSPFNLVHLDLTGMVGTSSNTYGA 393