Pairwise Alignments

Query, 388 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., conjugal transfer protein TraF from Dickeya dadantii 3937

 Score =  155 bits (391), Expect = 3e-42
 Identities = 118/397 (29%), Positives = 180/397 (45%), Gaps = 60/397 (15%)

Query: 14  LTSP-LAFSANYAVEARGDAMGGVGVVSGNFLTGPFYNPALVAIYRRNDDAGMILPSIGL 72
           L SP + F+A    +AR DAMGG GV S ++ +    NPAL+   + +D+  +ILPS+G+
Sbjct: 15  LFSPAITFAAGTWSDARNDAMGGTGVASSHYGSAALANPALLTKAQASDNVSLILPSVGV 74

Query: 73  SYNDPNDLITDLDK-------VSDIINQSS------------KGDYSNIGELNKSLTAMQ 113
             +DP  +    D+       + D++N SS            +   S+   L   L ++ 
Sbjct: 75  VVSDPEKVEDKFDRIKNSWDSIKDVLNSSSGITNPLLRRLALQQGISSFQSLRSDLNSIN 134

Query: 114 GDVLNAELGGVVAFAIPNQFISANVFGKAYTESFVSPIIDSRVCADDLCELERAKASSVN 173
            D    +       A+PN+ +   V  K +  +    ++  R    DL  L+   A +  
Sbjct: 135 DDRAYGDAAAATVVAVPNETLPFAVVVKGWGVANAKAVVTDR----DLAYLDSVAAGTTI 190

Query: 174 AVSVG--------------ITELGITLAKYQTFLGQHIAFGITPKLQRVYTYVYEASLNS 219
             S                +TE G+ +AK  +  GQ ++ GITPKLQR+ TY Y AS+N+
Sbjct: 191 PTSADLNNFTSRAEGAGALVTEYGVAMAKAFSIAGQPVSVGITPKLQRIDTYNYIASINN 250

Query: 220 YDIKDLRDN--------GNGETIFNMDAGALWFYGPIRIGFAANNLISREIKTKTITSAV 271
           Y   D R++         N +  F+ D  + W       G  A NLI R I TK +    
Sbjct: 251 YSSSDFRNSEFKKSSSGANLDLGFSTDLTSRW-----SAGLVAQNLIGRRIDTKEVQG-- 303

Query: 272 SGNPISYSYDMKPQYTVGAGIVADYFTLSVDYDLNEEERYKDFKDNTQMIRVGGEIDIMR 331
               I  ++ ++PQ T G     D  TL+ D DL     +   K N Q   VG E  ++ 
Sbjct: 304 ----IQRTFHLRPQVTAGTAWSTDALTLATDIDLTPASGFDSEKKN-QYAGVGAEYRVLS 358

Query: 332 QLKLRAGYNKNLAYDNTEGTVTAGIGLSPLNLFQLDL 368
             +LR GY  N+  D+ +  VTAG+GLSP  +  LDL
Sbjct: 359 WAQLRVGYRANMR-DSDKNLVTAGLGLSPFGV-HLDL 393