Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., two-component system DNA-binding transcriptional dual response regulator PhoB from Pseudomonas putida KT2440

 Score =  139 bits (351), Expect = 3e-38
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 8/221 (3%)

Query: 3   QTLLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHW--DKADLVILDRQLPDGDSV 60
           + +L+V+D+  + + + V+LE AGYDCL AE            K DL++LD  LP    +
Sbjct: 17  RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 76

Query: 61  QHLMDWKKIK---DIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRS 117
           +     K+ +   DIP+I+LTA     +K+ GL+ GA+DY+TKPF+  EL AR++A LR 
Sbjct: 77  ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136

Query: 118 PDSGQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDH 177
                 ++ +    L +D  +  V  +G+   +  TE+ LL F  ++  R +TR +LLD 
Sbjct: 137 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 196

Query: 178 VWGYNHFPTTRTVDTHVLQLRQKLPGLE---IETLRGVGYK 215
           VWG N +   RTVD H+ +LR+ L       ++T+RG GY+
Sbjct: 197 VWGGNVYVEERTVDVHIRRLRKALGEAYENLVQTVRGTGYR 237