Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

 Score =  134 bits (337), Expect = 1e-36
 Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 14/223 (6%)

Query: 5   LLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHW-----DKADLVILDRQLPDGDS 59
           +LL+ED++   + +   L +AGY     + ++D +        D   L+ILD  LP  D 
Sbjct: 3   ILLIEDNQRTQEWVTQGLSEAGYVI---DAVSDGRDGLYLALKDDYALIILDIMLPGMDG 59

Query: 60  VQHLMDWKKIKDIPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPD 119
            Q L   +  K  PVI LTA  +V D+V GLD+GANDYL KPF+ +EL AR+RAQLR   
Sbjct: 60  WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 120 SGQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 179
           +   +S +  S L +D  +  V  +  SITLTR EF LL  LAS  G +  R  +   +W
Sbjct: 120 A--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177

Query: 180 GYNHFPTTRTVDTHVLQLRQKL----PGLEIETLRGVGYKMKA 218
           G N    T TVD  + +LR K+    P   I T+RG+GY   A
Sbjct: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220