Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Enterobacter asburiae PDN3

 Score =  140 bits (354), Expect = 1e-38
 Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 6/218 (2%)

Query: 5   LLLVEDDKNLADGLLVSLEQAGY--DCLHAETIADVKQHWDKADLVILDRQLPDGDSVQH 62
           LL+VEDD  L +GL + L   GY  DC      AD      +  LVILD  LPD D    
Sbjct: 3   LLIVEDDLLLQEGLALGLANEGYALDCAGTAAEADALIQSGEYSLVILDLGLPDKDGATL 62

Query: 63  LMDWKKIKDI--PVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQLRSPDS 120
           L  W++ + I  PV++LTA   ++D++TGLDAGA+DYL KPFA AEL AR+RA +R    
Sbjct: 63  LSQWRR-RGIANPVLILTARDAIEDRITGLDAGADDYLVKPFALAELQARVRALIRR-YQ 120

Query: 121 GQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELLDHVWG 180
           G  D+ +   ++T++  T++V    +++ +T  EF LL  L    G+   R+ L   ++ 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRRDQAVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 YNHFPTTRTVDTHVLQLRQKLPGLEIETLRGVGYKMKA 218
           +   P + T++ H+  LR+KL    I+T+RGVGY++++
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKLGKDRIKTVRGVGYRLES 218