Pairwise Alignments

Query, 218 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., Transcriptional activator protein CopR from Alteromonas macleodii MIT1002

 Score =  135 bits (341), Expect = 5e-37
 Identities = 87/225 (38%), Positives = 123/225 (54%), Gaps = 19/225 (8%)

Query: 5   LLLVEDDKNLADGLLVSLEQAGYDCLHAETIADVKQHWDKA-----DLVILDRQLPDGDS 59
           +LLVEDD  +A  +   L   G++C+   T+ D    + +A     D VILD  LP+ D 
Sbjct: 3   VLLVEDDPKVASHIANGLLGEGHECI---TVGDGTSGYQQASSNELDAVILDVMLPELDG 59

Query: 60  VQHLMDWKKIKD----IPVILLTALVTVKDKVTGLDAGANDYLTKPFAEAELFARIRAQL 115
              L   +K+++     PV+LL+A   V+DKV GL  GANDYLTKPFA  EL AR+    
Sbjct: 60  FSVL---EKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLA 116

Query: 116 RSPDSGQDDSKVVTSNLTIDKATREVFFNGESITLTRTEFDLLLFLASNLGRVFTRDELL 175
                G+D + +   +LT+D   R+V    + I L   EF LL  L  + G+V TR  LL
Sbjct: 117 GRNKEGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLL 176

Query: 176 DHVWGYNHFPTTRTVDTHVLQLRQKLPGL----EIETLRGVGYKM 216
           + VW Y+  P T  +D H+ +LRQK+        IET+RG GY++
Sbjct: 177 EQVWNYHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221