Pairwise Alignments

Query, 554 a.a., ATP-dependent endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., Predicted ATP-dependent endonuclease of the OLD family, YbjD subgroup from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  426 bits (1096), Expect = e-124
 Identities = 232/550 (42%), Positives = 329/550 (59%), Gaps = 10/550 (1%)

Query: 12  MHLERIEIAGFRGIRRLSLTFDEITTLIGENTWGKSSLLDALSVVLPADGTLYPFTLQDF 71
           M LER+EI GFRGI RLSL  ++   LIGEN WGKSSLLDAL+++L  +  LY F  +DF
Sbjct: 1   MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPELDLYHFVREDF 60

Query: 72  HVDYSIADAQTQNLQIILVFAANDLHEPKAGRYRKLKPLWQTDEQGAQKIIYRISAS-RV 130
                    +  +L IIL F        +  RYR L+  W   E    +I YR+      
Sbjct: 61  WFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSLCEDDFHRIFYRLEGECGA 120

Query: 131 KYDISTQYAFLDLEGNSLTLHHSEKLAQELMSLHPVIRLKDSRRFEKSLANGNGKNAR-- 188
              + T  +FL+ +G  L + +     + L+ L PV+RL+D+R F + + NG   N    
Sbjct: 121 DGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLRDAR-FMRRIRNGTVPNVPDV 179

Query: 189 --VEKRISNTWRRLMATPGHVNKGEIRSSLSAMNSLVEHYFSFKS--QSRKNPRRERDSL 244
               +++    R L   P ++  G+IR  LSAM  L+EHYFS +   Q+R    R R   
Sbjct: 180 EVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQARHRLMRRRSQN 239

Query: 245 LYAASPSEKSLSQIIHETKNKQTKLLLLGLLNAYLQGKGPKELRRCARPILIIEDPEGRL 304
              +      ++++I +  ++  +++LLGL +  LQ KG   L + ARP+L++EDPE RL
Sbjct: 240 EQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQAKGTLRLHKDARPLLLVEDPETRL 299

Query: 305 HPTHLARAWSFLDLLPMQKILTTNSSDLLGAVPLHSIRRLVRKSDRTIATSVSQRSLSRD 364
           HP  L+ AW  L+LLP+Q+I TTNS +LL   P+  + RLVR+S R  A  +    LS +
Sbjct: 300 HPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAE 359

Query: 365 ELRRIGFHIRFHRSGALFARCWLLVEGETEVWLFNELAHQCGYNLAAEGVHIIEFAQSGL 424
           + RRI FHIRF+R+ +LFARCWLLVEGETE W+ NELA QCG++  AEG+ +IEFAQSGL
Sbjct: 360 DGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGL 419

Query: 425 KSLIKVARAFGIDWHVVTDGDPAGKKYSATVRGLLGHD--QERHRLTELPDRDIEHFLYS 482
           K L+K AR  GI+WHV+ DGD AGKKY+ATVR LL +D  +ER  LT LP  D+EHF+Y 
Sbjct: 420 KPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPALDMEHFMYR 479

Query: 483 HGFEYFFKELVKIPHDHPIPAKKVVSKVLKKHAKPDLALAIVSHCESNGTECIPVLLRWT 542
            GF   F  + ++P + P+  +K+++K + + +KPDLA+ +       G + +P L R  
Sbjct: 480 QGFADVFHRVAQLPPNVPMNTRKIITKAIHRSSKPDLAIEVAMEAGRRGIDAVPPLFRKM 539

Query: 543 LKRVITMANG 552
             RV+ +A G
Sbjct: 540 FSRVVWLARG 549