Pairwise Alignments

Query, 554 a.a., ATP-dependent endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., Uncharacterized protein YbjD from Escherichia coli ECRC101

 Score =  432 bits (1110), Expect = e-125
 Identities = 240/550 (43%), Positives = 332/550 (60%), Gaps = 10/550 (1%)

Query: 12  MHLERIEIAGFRGIRRLSLTFDEITTLIGENTWGKSSLLDALSVVLPADGTLYPFTLQDF 71
           M LER+EI GFRGI RLSL  ++   LIGEN WGKSSLLDAL+++L  +  LY F   DF
Sbjct: 1   MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDF 60

Query: 72  HVDYSIADAQTQNLQIILVFAANDLHEPKAGRYRKLKPLWQTDEQGAQKIIYRISASRVK 131
                  + +  +L IIL F  +     +  RYR L+  W     G  +I YR+     +
Sbjct: 61  WFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAE 120

Query: 132 Y-DISTQYAFLDLEGNSLTLHHSEKLAQELMSLHPVIRLKDSRRFEKSLANG---NGKNA 187
              + T  +FLD +G+ + +      A  L+ L PV+RL+D+R F + + NG   N  N 
Sbjct: 121 DGSVMTLRSFLDKDGHPIDVEDINDQAHHLVRLMPVLRLRDAR-FMRRIRNGTVPNVPNV 179

Query: 188 RVEKR-ISNTWRRLMATPGHVNKGEIRSSLSAMNSLVEHYFSFKS--QSRKNPRRERDSL 244
            V  R +    R L + P +++ G+IR  LSAM  L+EHYFS +   Q+R    R R S 
Sbjct: 180 EVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASN 239

Query: 245 LYAASPSEKSLSQIIHETKNKQTKLLLLGLLNAYLQGKGPKELRRCARPILIIEDPEGRL 304
              +      ++++I     +  +++LLGL    LQ KG   L + ARP+L+IEDPE RL
Sbjct: 240 EQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRL 299

Query: 305 HPTHLARAWSFLDLLPMQKILTTNSSDLLGAVPLHSIRRLVRKSDRTIATSVSQRSLSRD 364
           HP  L+ AW  L+LLP+Q+I TTNS +LL   P+  + RLVR+S R  A  +    LS +
Sbjct: 300 HPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTE 359

Query: 365 ELRRIGFHIRFHRSGALFARCWLLVEGETEVWLFNELAHQCGYNLAAEGVHIIEFAQSGL 424
           + RRI FHIRF+R  +LFARCWLLVEGETE W+ NELA QCG++  AEG+ +IEFAQSGL
Sbjct: 360 DSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGL 419

Query: 425 KSLIKVARAFGIDWHVVTDGDPAGKKYSATVRGLLGHDQ--ERHRLTELPDRDIEHFLYS 482
           K L+K AR  GI+WHV+ DGD AGKKY+ATVR LL +D+  ER  LT LP  D+EHF+Y 
Sbjct: 420 KPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYR 479

Query: 483 HGFEYFFKELVKIPHDHPIPAKKVVSKVLKKHAKPDLALAIVSHCESNGTECIPVLLRWT 542
            GF   F  + +IP + P+  +K++SK + + +KPDLA+ +       G + +P LL+  
Sbjct: 480 QGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKM 539

Query: 543 LKRVITMANG 552
             RV+ +A G
Sbjct: 540 FSRVLWLARG 549