Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., Transcriptional activator protein CzcR from Pseudomonas sp. DMC3

 Score =  139 bits (349), Expect = 6e-38
 Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 4/223 (1%)

Query: 5   IKILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGI 64
           +++LIIEDE     +L   ++   Y V +A    +GLHL    +  +I+LD+ LP  DG 
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHLALECDHAVIVLDVMLPGLDGF 60

Query: 65  SLTRELRAWTQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALRLAPS 124
            + R LRA  QTP+++++ARE+  D+++ L  GA+DYL KPF   EL+AR++   R +  
Sbjct: 61  GVLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGG 120

Query: 125 TESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLTHKQILKEV 184
            E V+ T   + DL +DL+ ++ T+AG  + LT  E+++L +LA+  G++L+   I + V
Sbjct: 121 HEPVQVT---IADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMV 177

Query: 185 WGGNYVEHHHYVRIHVAQLRHKVEDNPAQPRFILTENGVGYRL 227
           W  N+    + V + + +LR K+ D P   + + T  G+GY L
Sbjct: 178 WDINFDSDANVVEVAIKRLRAKL-DGPFNEKLLHTIRGMGYVL 219