Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

 Score =  139 bits (350), Expect = 4e-38
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 5   IKILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGI 64
           +KIL+IED    Q ++T  +S   Y +   S    GL+L    +  LI+LD+ LP  DG 
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 65  SLTRELRAWTQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALRLAPS 124
            + + LR   QTP++ ++AR+   D+V+ LD+GANDYL KPF   EL+AR+R  LR   +
Sbjct: 61  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120

Query: 125 TESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLTHKQILKEV 184
             S      E+  L +D V   V++    + LT+ E+ +L LLA   G+++    I  E+
Sbjct: 121 LNST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176

Query: 185 WGGNYVEHHHYVRIHVAQLRHKVEDNPAQPRFILTENGVGYRLV 228
           WG N+    + V + + +LR KV+D P   + I T  G+GY  V
Sbjct: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 219