Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., response regulator transcription factor HprR from Escherichia coli ECRC62

 Score =  140 bits (352), Expect = 3e-38
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 5   IKILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGI 64
           +KIL+IED    Q ++T  +S   Y +   S    GL+L    +  LI+LD+ LP  DG 
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 65  SLTRELRAWTQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALRLAPS 124
            + + LR   QTP++ ++AR+   D+V+ LD+GANDYL KPF   EL+AR+R  LR   +
Sbjct: 98  QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157

Query: 125 TESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLTHKQILKEV 184
             S      E+  L +D V + V++    + LT+ E+ +L LLA   G+++    I  E+
Sbjct: 158 LNST----LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 213

Query: 185 WGGNYVEHHHYVRIHVAQLRHKVEDNPAQPRFILTENGVGYRLV 228
           WG N+    + V + + +LR KV+D P   + I T  G+GY  V
Sbjct: 214 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 256