Pairwise Alignments

Query, 230 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., Transcriptional regulatory protein OmpR from Alteromonas macleodii MIT1002

 Score =  136 bits (343), Expect = 3e-37
 Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 5/228 (2%)

Query: 6   KILIIEDEAPIQRFLTVLISGYEYQVKVASTAEQGLHLVANWNPHLILLDLGLPDQDGIS 65
           KIL+++D+  ++  L   +    YQV+ A+ AEQ   L+   N HL++LDL LP +DG+S
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 66  LTRELRAW-TQTPIMVISAREKEADKVQALDAGANDYLTKPFGSEELMARIRVALRL--- 121
           + R LR      PI++++A+  E D++  L+ GA+DYL KPF   EL+AR +  LR    
Sbjct: 67  ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126

Query: 122 -APSTESVEQTRFELGDLVLDLVLKQVTKAGEPVKLTKTEYNILKLLAKNMGKVLTHKQI 180
            AP   S +    E G+  L+L  +++T    P+ LT  E+ +LK L  +  + L+  ++
Sbjct: 127 EAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 181 LKEVWGGNYVEHHHYVRIHVAQLRHKVEDNPAQPRFILTENGVGYRLV 228
           +    G +Y      + + V++LR  +E++PA PR+I T  G+GY  V
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFV 234