Pairwise Alignments

Query, 314 a.a., ribosome biogenesis GTPase YlqF from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., GTP-binding protein from Pseudomonas simiae WCS417

 Score = 49.3 bits (116), Expect = 2e-10
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 31/178 (17%)

Query: 23  AIPQVDVIIEVLDARIPFSSENPLIS-HIRGE-KPCVKVLNKRDLADPELTELWIAHLEQ 80
           AI + DV++ ++DAR  +++ + +I  H+R   K    V NK D  DPEL     A    
Sbjct: 78  AIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNIDPELAR---AEFSP 134

Query: 81  EKGVKAMAITTSNPQEVHKILELCRKLAPQ---REEIGKN-------------------- 117
                A+ I  ++ + + ++LE+     P+    EE G+                     
Sbjct: 135 MGLGDAIPIAGAHGRGITQMLEIALSSFPKDNAEEEEGEEEIVAEGEEAKRIPGPSEKDG 194

Query: 118 IRTMIMGIPNVGKSTIINTLAGRAIAQTGNQPAVTRRQQRINLQNG---IVLSDTPGI 172
           I+  I+G PNVGKST++N + G       +QP  TR    I  +       L DT G+
Sbjct: 195 IKIAIIGRPNVGKSTLVNRMLGEDRVIVYDQPGTTRDSIYIPFERNEEKYTLIDTAGV 252



 Score = 31.2 bits (69), Expect = 5e-05
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 122 IMGIPNVGKSTIINTLAGRAIAQTGNQPAVTRRQQRINLQ---NGIVLSDTPGILWPK-- 176
           ++G PNVGKST+ N L     A  G+   +TR +Q    +      ++ DT GI   +  
Sbjct: 7   LVGRPNVGKSTLFNRLTRTRDAIVGDLSGLTRDRQYGEAKWQGRSYIIVDTGGISGDEHG 66

Query: 177 VENPHSGFRLAATGAVKDTAMEYDEVAFYTV--EYLAKHYPERLKERYQI-DELPETDVE 233
           ++   +   L A           D  A YT   + + +H  +R K  Y + +++   D E
Sbjct: 67  MDEKMAEQSLLAIEEADVVLFLVDARAGYTAADQMIGEHLRKRNKRSYVVANKIDNIDPE 126

Query: 234 L 234
           L
Sbjct: 127 L 127