Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., chloride channel protein from Pseudomonas simiae WCS417

 Score =  107 bits (267), Expect = 7e-28
 Identities = 112/425 (26%), Positives = 191/425 (44%), Gaps = 41/425 (9%)

Query: 32  SVLFLSLLV---GILAGLVGTYFEQAVHLVSETR----TDWLKSEIGSFLPLWLAA---- 80
           S L L+L+V   GI AGL G      +H +         D L S+    L +  AA    
Sbjct: 7   STLILALVVVLTGIGAGLGGMLLALLLHGIQHLAYGYSLDSLVSDETFLLGVTAAAPERR 66

Query: 81  ---FLISAFLAFIGYFLVHRFAPEAAGSGIPEIEGAMDGMRPVRWWRVLPVKFFGGMGAL 137
               ++   +A +G++ ++R+     G  +  I+ A+    P+   +         +  +
Sbjct: 67  LLVLVVCGLVAGLGWWAIYRY-----GRPLVSIKQAVAEKMPIMPPKTTLAHAVLQIITV 121

Query: 138 GSGMVLGREGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAA-GAAGGLAAAFNAPLAGIM 196
             G  LGRE    ++G      +S   R + +   H LL A GA  GLAA +N PL G +
Sbjct: 122 ALGSPLGREVAPREVGALAATWLSQ--RARLDPQMHRLLVACGAGAGLAAVYNVPLGGAV 179

Query: 197 FVIEEMRPQFRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPEL----STLGL 252
           FV+E +   F +   +V A+  SA+AA++ +  +  Q       QY+ P        +  
Sbjct: 180 FVLEVLVGAFSWPA-AVIALATSAIAASVAWIGLGAQ------LQYEVPNFVLSPDLIAW 232

Query: 253 FLLLGALFGVFGVLFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTG 312
            ++ G +FGV    F  L   A+    +  R      L+  ++IGG    L + +P++ G
Sbjct: 233 AVVCGPVFGVAAYAFTQLTGKARAQAARGWRLPVLA-LINFTIIGG----LAMVLPQILG 287

Query: 313 GGISLIPTITNGGYGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLI 372
            G        +     G+  LL V ++  T+    +GA GG+  P LA G L     G  
Sbjct: 288 NGKGPAQLGFDNELSIGLAALLLVVKVLITISSLRAGAEGGLLTPGLANGALLAIILGGA 347

Query: 373 AKMWFPELNIEPGMFAIAGMGALFAATVRAPITGILLVIEMTN-NYHLILPLIITSLGAV 431
             + +P + +  G FAI G  A  AA++  P+T I+LV E T  ++  ++P+I+  +G++
Sbjct: 348 WSLAWPGVPL--GAFAIIGAAAFLAASMSMPLTAIVLVAEFTRIDHDFLVPIILAVVGSM 405

Query: 432 IFAQL 436
             ++L
Sbjct: 406 CMSKL 410