Pairwise Alignments

Query, 468 a.a., ClC family H(+)/Cl(-) exchange transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., Chloride channel protein from Variovorax sp. SCN45

 Score =  164 bits (414), Expect = 9e-45
 Identities = 127/424 (29%), Positives = 199/424 (46%), Gaps = 18/424 (4%)

Query: 32  SVLFLSLLVGILAGLVGTYFEQAV----HLVSETRTDWLKSEIGSFLPLW--LAAFLISA 85
           S+L  S+  G+L  L    F  A+    HL+       +   +   LP W  +A   +  
Sbjct: 25  SMLLWSIAAGLLGTLATELFRAALYGFEHLLLGPGEGLVA--MAKHLPWWARIACPTLGG 82

Query: 86  FLAFIGYFLVHRFAPEAAGSGIPEIEGAMDGMRPVRWWRVLPVKFFGGMGALGSGMVLGR 145
            +A +   L  R A  +A S   E     DG  PV    V   +    + ++G+G  +GR
Sbjct: 83  LVAGLLLVLAKRVAVRSATSDYMEAIVLGDGRIPVAQTLV---RSASSLVSIGTGGSIGR 139

Query: 146 EGPTVQMGGAVGRMISDIFRVKNEDTRHSLLAAGAAGGLAAAFNAPLAGIMFVIEEMRPQ 205
           EG  VQ+       +  + R   E  R  L+A GAA GL AA+NAP+AG  FV E +   
Sbjct: 140 EGSMVQLAALAASQLGRLLRFPAERLR-LLVACGAAAGLTAAYNAPIAGAFFVAEIVLGS 198

Query: 206 FRYTLISVRAVIISAVAANIVFRVINGQDAVITMPQYDAPELSTLGLFLLLGALFGVFGV 265
               + SV  +II++V AN+  R + G      MP +     + + LF +LG L G   V
Sbjct: 199 I--AMESVGPIIIASVVANVAMRALPGYQPPYKMPAFPEIHGTEVILFCVLGVLLGFAAV 256

Query: 266 LFNYLITLAQDLFVKFHRNDRKRYLLTGSMIGGCFGLLLLYVPELTGGGISLIPTITNGG 325
            F   +  ++ LF K       R  L G ++G     + + +PE+ G G S++  + +  
Sbjct: 257 GFLRALQGSRALFAKLPIALPWRLALGGLLMGA----ISVPMPEVWGNGYSVVNAVLHTP 312

Query: 326 YGAGILLLLFVGRIFTTLLCFGSGAPGGIFAPMLALGTLFGYAFGLIAKMWFPELNIEPG 385
           +   ++ ++ V +   T+   GSGA GG+F P L  G + G  FGL  +  +P  +  P 
Sbjct: 313 WPWTLIAMVLVAKAAATMATAGSGAVGGVFTPALFFGCMIGALFGLAVQALWPASSSAPF 372

Query: 386 MFAIAGMGALFAATVRAPITGILLVIEMTNNYHLILPLIITSLGAVIFAQLLGGQPIYSQ 445
            +AI GMGA  A   +AP+  IL++ EMT +Y ++LPL+  S+ A   A+      +Y  
Sbjct: 373 AYAIVGMGAFLAGATQAPLMAILMIFEMTLSYQVMLPLMAASVIAYFVARSANAGSMYEI 432

Query: 446 LLHR 449
            L R
Sbjct: 433 TLRR 436