Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  105 bits (263), Expect = 7e-27
 Identities = 127/533 (23%), Positives = 224/533 (42%), Gaps = 61/533 (11%)

Query: 184 IAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEAD 243
           I   F A ++HE+R PL+ +     +++     P+            +LD L+ I   AD
Sbjct: 285 IKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPR------------QLDYLNTIEKSAD 332

Query: 244 DVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEV-- 301
           +++   N  +D   + I+  ++   S    ++ D+I+  +       A   H+ +LE+  
Sbjct: 333 NLLGIINEILDF--SKIEAGKLVLDSIP-FNLRDLIQDTLTIL----APAAHAKQLELLS 385

Query: 302 ----HQPFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHN-----LIRVRD 352
                 P    G    L   L NL+ NA  + +E  ++ +      EH       I V+D
Sbjct: 386 LIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQD 444

Query: 353 NGVGIAPEMLEDIFRDFYTFGKN-----GSYGLGLPFCRKVMSAFGGTIRCASQQGQWTE 407
            G+G++P+ +  +F+ F     +     G  GLGL   ++++   GG I   S  G+ ++
Sbjct: 445 TGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQ 504

Query: 408 FVLSF--PRYDSDTVNEIKTELLKTKSLIYIG---SNQAIVRELNQLAVEDEFGFT---A 459
           F +S   P+   D        LL  ++ I  G   + QA+  +L    +      +    
Sbjct: 505 FWISLNLPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQL 564

Query: 460 ISAQQAVRRQDYEFEFDLILLDLDDATAQ--GELLPKLEGTLSFAEGCIGYVYDPGKTYA 517
           +   QA  +    FEF ++  +L + + +  G    +LE        C   V  P    A
Sbjct: 565 LQGVQAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLE-----RYHCQCVVLCPTTEQA 619

Query: 518 VNINRYL---RIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRILVVD 574
           +  + YL     Q +S  +  RK R+++  L+  +  L+   N       +   +IL VD
Sbjct: 620 L-YHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPLAEGSN----PNGQRRPKILCVD 674

Query: 575 DNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIR 634
           DN +       LLE  G EV+  N+G   ++ ++ +  DLVLMD++MP + G   T  IR
Sbjct: 675 DNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDGRACTEQIR 734

Query: 635 NSEHEYKN--IPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAW 685
             E+      +PI+  T          +  SGM+D++ KP     L   V  W
Sbjct: 735 LWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW 787