Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  100 bits (248), Expect = 6e-25
 Identities = 121/534 (22%), Positives = 222/534 (41%), Gaps = 67/534 (12%)

Query: 188  FGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEADDVIY 247
            F A ++HE+R P++A+          I     A  TD  LD ++ D + +I      ++ 
Sbjct: 723  FLANMSHEIRTPMNAI----------IGMAHLALKTD--LDPRQKDYVRKIQQSGQHLLG 770

Query: 248  SGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQ--PF 305
              N+ +D   + I+  ++   + + H +  V+E        K  A    +  +V    P 
Sbjct: 771  IINDILDF--SKIEAGKLEVEATEIH-LDKVLENVGNLISEKATAKGLELLFDVGAGVPL 827

Query: 306  DFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISI---EQTSEHNLIR--VRDNGVGIAPE 360
            D  G    L   L N   NA  +  E   + +++   E      ++R  VRD G+G+  E
Sbjct: 828  DLMGDALRLGQVLINYANNAVKFT-EAGEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDE 886

Query: 361  MLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQ----WTEFVLS 411
                +F+ F      T  K G  GLGL   +K+    GG++   S  GQ    W    L 
Sbjct: 887  QKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTFWFTARLG 946

Query: 412  FPRYDSDTVNEIKTELLKTKSLIYIGSNQ----AIVRELNQLAVEDEFGFTAISAQQAVR 467
              +  +  + E +   L+ + ++ +  N+     +V  L+ ++ E +   +   A  A+R
Sbjct: 947  KGKPRAPLIPEAE---LQGRRMLVVDDNENARAVLVDMLSAMSFEVDAVDSGAKALDAIR 1003

Query: 468  RQDYEFEFDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLR-- 525
                +  +D++ LD          +P ++G L  AE  I  +  P   + + +  Y R  
Sbjct: 1004 DAVLDLPYDVVFLDWQ--------MPDMDG-LEVAEQ-IHSIRLPFPPHLIMVTAYGREE 1053

Query: 526  --------------IQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHERRIL 571
                          I+P+S  ++     ++        E+  ++        +    ++L
Sbjct: 1054 IIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSEGGSVDHAALRGLKVL 1113

Query: 572  VVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATR 631
            +V+DN   +     +L   G EV  A++G   ++   +   DL+LMD++MP + G+ ATR
Sbjct: 1114 LVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMPVMDGVTATR 1173

Query: 632  LIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAW 685
             IR   H   ++PII  T +           +GMND I KP D D + + ++ W
Sbjct: 1174 EIRRLGH--VDLPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISRW 1225