Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 97.1 bits (240), Expect = 6e-24
 Identities = 126/550 (22%), Positives = 220/550 (40%), Gaps = 75/550 (13%)

Query: 179  ETKVSIAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQI 238
            E    +   F A ++HE+R P++A+          I     A  T+  L  ++ D + +I
Sbjct: 880  EDATRMKSDFLANMSHEIRTPMNAI----------IGMSHLALKTE--LTPRQHDYVKKI 927

Query: 239  LNEADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVE 298
             +    ++   N+ +D       +  V    F+   V+D I   + T   +  + +   +
Sbjct: 928  QSAGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLL-TEKTRAKSLELVFD 986

Query: 299  LEVHQPFDFFGSDTLLTYALFNLLKNAFYYQKE-HFSVCISIEQTSEHNLI---RVRDNG 354
            +    P    G    L   L N   NA  + +     +   +++ SE  ++    VRD G
Sbjct: 987  IPSEVPRTLVGDSLRLGQILINYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTG 1046

Query: 355  VGIAPEMLEDIFRDFY-----TFGKNGSYGLGLPFCRKVMSAFGGTIRCASQQGQWTEFV 409
            +GI  E    +F+ F      T  K G  GLGL   +++    GG +   S+ G+ + F 
Sbjct: 1047 IGITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFW 1106

Query: 410  LSFPRYDSDTVNE---IKTELLKTKSLIYIGSNQAIVRELNQLAVEDEFGFTA----ISA 462
             +  R    TV +   + +  L+ + ++ +  N      L  L     F  T     + A
Sbjct: 1107 FT-ARMGIGTVRKRRLLPSPDLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEA 1165

Query: 463  QQAVRRQDYE-FEFDLILLDLDDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNIN 521
               V+R       ++++LLD          +P ++G +  A   +    DP     + + 
Sbjct: 1166 VDEVKRAAMAGTPYEIVLLDWR--------MPGMDG-IETAHHLMALGLDPAPRLLM-VT 1215

Query: 522  RYLR------IQPISIHSILRKPRKIIERLLFE-------------------QESLSMNR 556
             Y R      I    I  +L KP  +   +LF+                     S  M+ 
Sbjct: 1216 AYGREEVLNLITEAGIEDVLIKP--VSASILFDTIMRLFGCQPAEPRDVDGGHSSSEMHL 1273

Query: 557  NVIPLQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVL 616
              I         RIL+V+DN   +     LL   G++V  A+DG+  L  +     D+VL
Sbjct: 1274 ETI------RGARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVL 1327

Query: 617  MDIEMPNVGGLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRD 676
            MD++MP + G+ ATR IR    ++ ++PI+  T +   +       +GMNDFI KP D D
Sbjct: 1328 MDMQMPVMDGVAATREIRRL-GQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPD 1386

Query: 677  VLLNKVAAWV 686
             L   +  W+
Sbjct: 1387 QLWAALLRWI 1396