Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 918 a.a., BarA sensory histidine kinase (= VarS = GacS) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 114/520 (21%), Positives = 210/520 (40%), Gaps = 55/520 (10%)

Query: 184 IAKTFGAGIAHEMRNPLSALKTSIDVVRTMIPKPQTAAHTDYSLDAQELDLLHQILNEAD 243
           I   F A ++HE+R PL+ +   I   R  +            L+  + D L+ I   A+
Sbjct: 292 IKSEFLANMSHELRTPLNGV---IGFTRLTLKT---------ELNPTQRDHLNTIERSAN 339

Query: 244 DVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQ 303
           +++   N+ +D       +  +    F   + +D +   +    +    +  ++ ++   
Sbjct: 340 NLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLEL-TLNIKNDV 398

Query: 304 PFDFFGSDTLLTYALFNLLKNAFYYQKEHFSVCISIEQTSEHNL-----IRVRDNGVGIA 358
           P +  G    L   + NL+ NA  +  E  ++ I +E+ +  N      +++RD G+GI 
Sbjct: 399 PDNVIGDPLRLQQVITNLVGNAIKFT-ESGNIDILVEKRALSNTKVQIEVQIRDTGIGIP 457

Query: 359 PEMLEDIFRDFYTFG-----KNGSYGLGLPFCRKVMSAFGGTIRCASQ--QGQWTEFVLS 411
                 +F+ F         ++G  GLGL   +K+++  GG I   SQ  +G    F ++
Sbjct: 458 ERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIN 517

Query: 412 FPRYDSDTVNEIKTELLKTKSLIYIGSN----QAIVRELNQLAVEDEFGFTAISAQQAVR 467
                +  ++   T  L  K L Y+  N    Q  +  L+   VE  +  T  +   A  
Sbjct: 518 LDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLA-- 575

Query: 468 RQDYEFEFDLILLDL-----DDATAQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINR 522
                  +D+++L +     +  T Q E L K      F    +             IN 
Sbjct: 576 ------HYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLAL--------PCHAQINA 621

Query: 523 YLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPL--QKSRHERRILVVDDNQSIR 580
             +++     + L KP      L    E   +N +  PL    S+    ++ VDDN +  
Sbjct: 622 E-KLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANL 680

Query: 581 TFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRNSEHEY 640
                LLE +   V   + G + +   +    DL+LMDI+MP++ G+ A  LI    H+ 
Sbjct: 681 KLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQ- 739

Query: 641 KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
           +  P+I  T          + ++GMND++ KP + + L N
Sbjct: 740 QQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHN 779