Pairwise Alignments

Query, 686 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1172 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 124/540 (22%), Positives = 232/540 (42%), Gaps = 50/540 (9%)

Query: 173  RNQISHETKVSIAKT-FGAGIAHEMRNPLSALKTSIDVV-RTMIPKPQTAAHTDYSLDAQ 230
            +  + H  + + AK+ F A ++HE+R PL+ +    D+V +T +   Q           Q
Sbjct: 524  QQSMRHAEQANRAKSEFLANMSHEIRTPLNGIIGFSDLVLKTELNDRQE----------Q 573

Query: 231  ELDLLHQILNEADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKA--VKTFPY 288
             L +++Q  N   ++I   N+ +D   + I+  ++     +++ + +++E+A  + T+  
Sbjct: 574  YLSIVNQSANSLLNII---NDILDF--SKIEAGKLD-LDIERYDLYELVEQASDIITYVI 627

Query: 289  KNAADQHSVELEVHQPFDFFGSDTLLTYALFNLLKNAFYY-QKEHFSVCISIEQTSEHN- 346
                 +  + +  + P   +     L   L NLL NA  +  K    + ++    S  N 
Sbjct: 628  HQKGLEMLLNISPNIPRFAWIDSVRLKQVLVNLLGNASKFTDKGEIELKLTPLSNSNKNG 687

Query: 347  ----LIRVRDNGVGIAPEMLEDIFR-----DFYTFGKNGSYGLGLPFCRKVMSAFGGTIR 397
                   VRD G+GI  E  + IF      D  T  K G  GLGL    +++   G  ++
Sbjct: 688  EMDIRFSVRDTGIGIKSEKQDKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMGSKLQ 747

Query: 398  CAS--QQGQWTEFVLSFPRYDSDTVN-EIKTELLKTKSLIYIGSNQAIVRELNQLAVEDE 454
              S   +G    F L     D   +  E +  L K   +    +N+ I+  +  LA++  
Sbjct: 748  LTSTPNRGSTFYFDLRIKCEDGQAIPLEGEPNLHKILIVDDNANNRMIIERM--LALKGI 805

Query: 455  FGFTAISAQQAVRRQDYEFEFDLILLDLDDATAQG-ELLPKLEGTLSFAEGCIGYVYDPG 513
                A +  +A++R     E+D+IL+D       G +   K+    +F E  I +++   
Sbjct: 806  QTVQAKNGYEAIQRLVDGEEYDVILMDFQMPYLNGIDTARKIRA--NFKEQPIIFLHSSS 863

Query: 514  KTYAVNINR------YLRIQPISIHSILRKPRKIIERLLFEQESLSMNRNVIPLQKSRHE 567
            +   +++        +  I+PI +  +     KI       +E         PL   +  
Sbjct: 864  EDKTISLASKELSIPHRLIKPIKMQDMYDALLKIKHNNRKGKEPKEKRLYAPPLLTEKSS 923

Query: 568  RRILVVDDN--QSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVG 625
              IL V+DN    +   T I        V++A++G + L+ ++    D++ MD++MP + 
Sbjct: 924  --ILFVEDNAINMLLGKTVIHNISPKTTVLEASNGKQALELLKVNLPDMIFMDVQMPEMN 981

Query: 626  GLEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAW 685
            G EAT++IR  E++ KN+ I   T  N          +GM+DFI KP   + L+  +  W
Sbjct: 982  GYEATKIIR-KEYKNKNLLIFALTAGNLKGEKEKCMEAGMDDFIAKPFVEEDLIRLLEKW 1040