Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1212 a.a., chromosome segregation protein SMC from Pseudomonas simiae WCS417

 Score =  238 bits (607), Expect = 2e-66
 Identities = 327/1246 (26%), Positives = 511/1246 (41%), Gaps = 293/1246 (23%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L + L+     AG  EIDFT   L  A LF I G TGAGKS++LDA+C AL+G    
Sbjct: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR 60

Query: 59   SERTGDQMRCDYAAPESL---------------TEVIFEFELAGARYQITRQPDQEIPKK 103
               TG     D  +  S+                EV F   ++G RY+   + ++   K 
Sbjct: 61   LGDTGQAKMPDADSDISIGDPRTLLRRGTGGGYAEVDF-VGVSGRRYRARWEANRARDKA 119

Query: 104  RGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRE 163
             G+    +    +L+ L SD  +L+A++       +   +GL+ +QF + ++L Q +F  
Sbjct: 120  SGKLQNSRQ---SLIDLDSD--QLLASQKTEYKTQLELALGLNFEQFTRAVLLAQSEFSA 174

Query: 164  LLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEE 223
             L AN  ER ++  +L  T LY+Q+ R  F++A   R+  ++   Q  G + +   E+  
Sbjct: 175  FLKANDNERSELLEKLTDTALYTQLGRRAFDKAKEAREAHKQLQDQATGVVPLAA-EARA 233

Query: 224  QLQTELTELAPVLTHAQSQLKAEQQQ--W-DETKAHYQAALELEQQFIRKQQLVVEIATH 280
            +L  +       L   Q+QLK  + Q  W  E +   +  L   +Q  R Q         
Sbjct: 234  ELDQQFDAAQQHLKTQQAQLKQLELQHTWLKELREWQERQLATTEQLQRAQAEWDNQGQQ 293

Query: 281  QEQATHIEMLRQQRQQAQKAARLT------AVHQQWHQAQKNLQQAKLKVEQQQTLLQQA 334
            ++  + ++ L  QR Q  + A L+      A   Q H+     QQ +L   Q+Q   QQA
Sbjct: 294  RDDLSRLDQLAPQRHQFARQAELSTLLAPLAAQIQLHRQ----QQGELHTRQEQAQQQQA 349

Query: 335  KAQQQQAQQASQQASLA----------------CEEVPKLNEQR-------ITWQRAEQK 371
             AQ   AQ    QA                    +E+ K  E +       I  QR    
Sbjct: 350  SAQTALAQALKNQADAVPLLRQAFEEQSTLAHLTKELAKRIEDKQQHESACIEGQRQLTG 409

Query: 372  LLAQEN-----VQQAVAKAERELQLA------------------TQNALNLQQAS-EKLE 407
            LL ++N     +Q+   + +R   LA                    N LN  QA   +LE
Sbjct: 410  LLEKQNQVAERLQRLSTELDRSAALAPLSDAWTAYRDRLQQLMLIGNRLNKGQAELPQLE 469

Query: 408  QELQNQRLEWEQQQRQLTRL-EVQKARMNQLVQQVQAR---------------------E 445
            Q   +   ++ QQ+  L  L +   A  + + +Q+Q                       +
Sbjct: 470  QRATSAAEQFTQQREALDLLYQEAGAEPHAVAEQIQLLASLLQDNRKQQRAFEDLTRLWD 529

Query: 446  REQSLLNELQTAQQALLRFEQQHHH-----IQTQAE--QAKLTADKLEFAWHTQRAA--- 495
             +Q L  +  T  Q L   +QQ        +QT+AE   A+ T +  +     QR A   
Sbjct: 530  NQQQLDQQAATLTQKLTDAQQQREQLNQAGLQTKAELSVAEQTLNVTKQLLERQRLARSA 589

Query: 496  ---ELALALTQNEPCPVCGSLEHP-------------------------------NKAQY 521
               EL   L  ++PCPVCGS EHP                                  + 
Sbjct: 590  SVEELREQLQDDQPCPVCGSHEHPYHQPEALLQSLGRHDENEEAAAQKAVDTLKEKLTEL 649

Query: 522  SGDVVTKVQVEQARQQQQDWVQRQQEAF---------------------HAW--QQQGFK 558
             G+V   +  ++   QQQ+ +  QQ+A                       AW  QQ G  
Sbjct: 650  RGEVGGLIAQQKEYLQQQEHLATQQQALKPSLDAHPLYASLLNQETAKRSAWLEQQLGQL 709

Query: 559  TEQIAQNLTTLSSELTLQQVA----------------LLNELIEQQQILHSDIAALQQ-- 600
            T+ I+Q+     + L LQQ A                    L++QQ+ L  D   L Q  
Sbjct: 710  TQSISQDEQRQGALLNLQQNAGRLQQQLQAAQDASQQARQLLVDQQRELAGDRERLDQEL 769

Query: 601  ------LNPDLLK--------------RQIEEGEQRLAHTKMTLEKQ------------- 627
                  L  D L+              +Q+ +  ++L H +  L +Q             
Sbjct: 770  SAFANLLPADTLEGLRAEPAATFMQLDQQVNQRLEQLGHQRDELAEQQDRQQAIEKEQTH 829

Query: 628  NQNQQQAWQTLAQLQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQW 687
             Q++QQ    L Q   ELAS +Q    +LS L    S+    Q Q+E   +A   +R+  
Sbjct: 830  QQHRQQQLDALLQQVNELASQQQTAQAKLSALLGEHSSAEHWQQQLE---QAVTQSRQSE 886

Query: 688  VQAQKQFASVQAAYQAAIE--AHRESQRQQEETTSAWQQGL---------LH-----SGF 731
              A KQ   +Q  + A IE  A  ++Q+++E    A    L         LH     +G 
Sbjct: 887  TDANKQ---LQEIHNALIELAADLKAQQEREHALQAEHHALATRISEWRALHPELDDAGL 943

Query: 732  SDESAY-------------LAARLTDEAIVNIERQIAQYEERSAMLSG--EQQALSRKLA 776
            S   AY             L+ +  ++A V ++ +  +  +  A+ +G  E QAL   LA
Sbjct: 944  SHLLAYDDAQVSQLRQQLQLSEKAVEQAKVLLQEREQRLADHQALHNGNLEAQALDSALA 1003

Query: 777  EKNRPELEPLLVKVTQAEEKMALALQA-FTQHQSRMDGLQRVAKQLADLYQKNRALEAEY 835
              N+   E          EK+   L+A  ++ Q R +  Q  A+ +A  Y        E+
Sbjct: 1004 TLNQQLAE---------GEKICAELRARQSEDQRRQEANQAFAEHIAKAYD-------EW 1047

Query: 836  QVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGN 895
            Q    L+ +    TG   +  +      LD ++  A+ +L ++ R RY LKR        
Sbjct: 1048 QRWARLNALIGSATGD--TFRKIAQAYNLDLLVHHANVQLRQLVR-RYRLKRG------- 1097

Query: 896  VGSGLDLMVEDSYSG-KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDE 954
             GS L L+V D+  G + R V +LSGGE+F+ +L+LALGL+ +    S  +++++LFIDE
Sbjct: 1098 -GSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASMA---SSTLKIESLFIDE 1153

Query: 955  GFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
            GFGSLDPESL LA+  L  LQ  GR + +ISHV E+ E+I +++ V
Sbjct: 1154 GFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV 1199