Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1214 a.a., Exonuclease SbcC from Pseudomonas putida KT2440

 Score =  226 bits (577), Expect = 6e-63
 Identities = 314/1236 (25%), Positives = 500/1236 (40%), Gaps = 272/1236 (22%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L + L+     AG  +IDFT   L  A LF I G TGAGKS++LDA+C AL+G    
Sbjct: 1    MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPR 60

Query: 59   SERTGDQMR---CDYAAPES-------------LTEVIFEFELAGARYQITRQPDQEIPK 102
                G + +    D   P S               EV F   + G RY+   + ++   K
Sbjct: 61   LNAIGREAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDF-VGIDGRRYRARWEANRARDK 119

Query: 103  KRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFR 162
              G+    +     L     D  +++ +  N   + V   +GL+ +QF + ++L Q +F 
Sbjct: 120  ANGKLQHSRQSFYDL-----DSEQVLGSGKNEYKQLVEARLGLNFEQFTRAVMLAQSEFG 174

Query: 163  ELLTANSKEREQIFGQLFQTQLYSQIERALFERA-------------------------A 197
              L A+ K+R ++  +L  T +Y+++ +  F +A                         A
Sbjct: 175  AFLKADDKDRSELLEKLTNTAIYTRLGQRAFSKAREAGEAHNALKERASHLLPMAAEARA 234

Query: 198  GIRKEKEEFDQQIKGTLSVVG-LESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAH 256
             + +  E+  QQ K   +    LE +     E  +L    T A + L+A +  W +    
Sbjct: 235  ELDQRLEQAQQQFKADQAGERQLEQQRNWLNEQRQLQAQHTEASTTLQAAELDWQQLAEP 294

Query: 257  YQAALELEQ------QFIRKQQL-------VVEIATHQEQATHIEMLRQQRQQAQKAARL 303
                  LE+      QF R+Q L         +IA  Q+Q   +++  ++ +QA   AR 
Sbjct: 295  RLDLARLERLAPQRHQFHRRQALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALDTARQ 354

Query: 304  TAVHQQWHQAQK--NLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKL--N 359
                +Q    +    L+QA    +    L Q+  AQ+  +QQA QQ +   +++ +L  N
Sbjct: 355  ALADRQAEHGENAPRLRQAFAAQDTLARLDQELAAQRSISQQAQQQVADGQQQLQQLEDN 414

Query: 360  EQRITWQRA--------EQKLLAQENVQQAVAKAERELQL-------ATQNALNLQ---- 400
            +QR   Q A         Q L    N   A     +++ L         +    LQ    
Sbjct: 415  QQRSVQQLALIDTALADSQHLAGLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQAS 474

Query: 401  QASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQA 460
            QA+ +L+ E     L + + + +   L  Q   +  ++Q  + ++R    ++ L   +Q 
Sbjct: 475  QANARLQAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQE 534

Query: 461  L------LRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQN---------- 504
            L      LR  QQ   +Q Q    + TA K E       AAE AL LT+           
Sbjct: 535  LRQQLDALRERQQQAMLQRQQLITEGTAAKAEL-----EAAEQALTLTRQLLERQRLARN 589

Query: 505  -------------EPCPVCGSLEHP-------------------NKAQYSGDVVTKVQVE 532
                         EPCPVCGS EHP                   + AQ   + +    VE
Sbjct: 590  TSVEELRNQLRDGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETLNSKLVE 649

Query: 533  QARQ------QQQDWVQRQQ---------------------------EAFHAWQQQGFKT 559
               Q      Q +D+ Q+QQ                           +A  AW     + 
Sbjct: 650  LRTQLGVVNAQLKDFQQQQQRLGEQLQPLVAQVQAHSLWPALAPQDDKARSAWLDSQLRR 709

Query: 560  --EQIAQNLTTLSSELTLQQ-VALLNE---------------LIEQQQILHSDIAALQQ- 600
              E+I+Q+    S+ L LQ+  A LN+               L +Q Q L +D   LQQ 
Sbjct: 710  LDEEISQDEKRQSALLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQLLQQG 769

Query: 601  ---------------LNPD------LLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLA 639
                           LN D       L +QI +  Q+L   K  LE+Q   Q Q  +   
Sbjct: 770  LNDLAGVLPEEALKALNDDPANAFLALDQQIAQRLQQLEQRKDELEEQQARQTQLDKLRD 829

Query: 640  QLQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQ---------- 689
            Q QA +   +Q++  +L+ LD  R     + +  E+L   EH + E W Q          
Sbjct: 830  QQQARVQG-QQQLQQKLAALDEQRQQA--LASLAELL--GEHASAEAWQQHMDTALEHAR 884

Query: 690  ------AQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLT 743
                  AQ+         Q A E    +Q+QQ       Q     + +  E   L     
Sbjct: 885  TLDADTAQRLQDLRTQGVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDDAGL 944

Query: 744  DEAIVNIERQIAQYEERSAMLSGEQQALS--RKLAEKNRPELEPLLVKVT------QAEE 795
            D  +   + Q+ +  +R   L G ++A+   R L ++    L+    ++T        E+
Sbjct: 945  DRLLAMDDAQVNELRQR---LQGAEKAIEQGRVLLQEREQRLQHHAAQMTVDTTVQALEQ 1001

Query: 796  KMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQV----------VGTLSDIA 845
             +A   +    H+ +   L+          Q ++AL AE +           +  L   A
Sbjct: 1002 ALAELRERLANHEQQCAELRAQQADDQRRQQAHQALAAEIEQAHQQWQRWARLNALIGSA 1061

Query: 846  NGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVE 905
            +G    K++      G  LD +L  A+ +L +++R RY LKR         GS L L+V 
Sbjct: 1062 SGDVFRKIAQ-----GYNLDLLLHHANAQLRQLAR-RYRLKRG--------GSALGLLVL 1107

Query: 906  DSYSG-KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESL 964
            D+  G + R V +LSGGE+F+ +L+LALGL+ +    S  +R+++LFIDEGFGSLDPESL
Sbjct: 1108 DTEMGDELRSVHSLSGGETFLVSLALALGLASMA---SSTLRIESLFIDEGFGSLDPESL 1164

Query: 965  DLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
             LA+  L  LQ  GR + +ISHV E+ E+I +++ V
Sbjct: 1165 QLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV 1200