Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1046 a.a., Exonuclease SbcC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  289 bits (739), Expect = 8e-82
 Identities = 307/1087 (28%), Positives = 489/1087 (44%), Gaps = 146/1087 (13%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGET-- 56
            M+ L L L+      G  ++DFT        LF I G TGAGK+++LDAIC ALY ET  
Sbjct: 1    MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 57   --TGSERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107
              T S+   D M  D A  E L EV  EFE+ G  ++          QPD  +   R E 
Sbjct: 61   LNTVSQSQNDLMTRDTA--ECLAEV--EFEVKGEAWRAFWSQNRARNQPDGNLQAPRVE- 115

Query: 108  MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167
                      +A  SDG ++ A+K     + +  L GLD  +F + M+L QG+F   L A
Sbjct: 116  ----------LARCSDG-KIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAAFLNA 164

Query: 168  NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227
             +KER ++  +L  T++Y QI   +FE+    R E E+   Q  G    V L ++EQLQ 
Sbjct: 165  KAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASG----VALLADEQLQ- 219

Query: 228  ELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHI 287
            +L      LT  + +L A+QQ   +   H+           RK +L  E+   Q+     
Sbjct: 220  QLEASLQALTDEEKRLLADQQG-QQQHLHW---------LTRKNELHTELHARQQALYAA 269

Query: 288  EMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQ 347
            +  R++ Q    A  L    +Q     + +Q+    VE+ +    +  A+ Q A +  Q+
Sbjct: 270  QEAREKAQPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQR 329

Query: 348  ASLACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQASEKLE 407
                     +  +   T QR +  L   + ++  V ++E    LA   AL  QQ+ ++ +
Sbjct: 330  IRACAHR--QFTQLNATGQRLKTWLAEHDGIR--VWRSE----LAGWRALLTQQSHDRAQ 381

Query: 408  QELQNQRLEWEQQQRQ--------LTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQ- 458
                 Q+L  + +QR         LT   + +AR     +Q   R R  +L  ++   Q 
Sbjct: 382  LSQWQQQLLSDTRQRDALPPLTLDLTPQALAEARALH-TRQRPLRHRLAALQGQILPKQK 440

Query: 459  -QALLRFEQQHHHIQTQAEQAKLTADK-LEFAWHTQRAAELALALTQN------------ 504
             QA L+     HH Q QA+  +  ADK L +    Q  A++     Q             
Sbjct: 441  RQAQLQAAIARHH-QEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAH 499

Query: 505  ----EPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEA-----FHAWQQQ 555
                +PCP+CGS  HP  A Y    ++  Q  +   +++     ++ A       A  QQ
Sbjct: 500  LQSGQPCPLCGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQ 559

Query: 556  GFKTEQIAQNLTTLSSELTLQQVALLNEL---IEQQQILHSDIAALQQLNPDL--LKRQI 610
              + E  AQ+L      LT +   L   L   ++ Q+ L   + A ++    L  L ++ 
Sbjct: 560  LQRDESEAQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRH 619

Query: 611  EEGEQRLAHTKMTLEKQNQNQQQAWQTLAQL-------------------QAELASLRQE 651
                Q  AHT+       Q  Q+     A L                   +A+ A + Q+
Sbjct: 620  ALQTQIAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQ 679

Query: 652  IPPELSDLDTLRSAIGRVQNQIEILQKAE------HTAREQWVQAQKQFASVQAAYQAAI 705
               E +DL   +  I R+   +E L + +          + W QA  +  S+Q+  Q   
Sbjct: 680  RQTEFADL---QMQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQ 736

Query: 706  EAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQI----AQYEERS 761
            E   + Q++  E  + +   L +S F  ++ +LAA L +E +  +E+Q     +Q ++  
Sbjct: 737  EQTTQEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAK 796

Query: 762  AMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQL 821
            A+ +   QAL+    ++    L+P       A+    LA Q   ++ +R   +++  KQ 
Sbjct: 797  ALSAQSAQALADH-QQQPPAGLDPTCTAEQLAQRLTQLA-QQLRENTTRQGEIRQQIKQD 854

Query: 822  ADLYQKNRALEAEYQVV-------GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQR 874
            AD  Q+ RAL  E +         G L+ +   K G K    +F  G+ LD+++  A+ +
Sbjct: 855  ADNRQRQRALMTEMKQASQQVEDWGYLNALIGSKEGDK--FRKFAQGLTLDNLVWLANHQ 912

Query: 875  LMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALG 933
            L ++  GRYLL+RK   A       L+L V D++     RD  TLSGGESF+ +L+LAL 
Sbjct: 913  LTRL-HGRYLLQRKASDA-------LELEVVDTWQADAVRDTRTLSGGESFLVSLALALA 964

Query: 934  LSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQ 993
            LSD+V   S   R+D+LF+DEGFG+LD E+LD A+  L  L   G+TIG+ISHV  +KE+
Sbjct: 965  LSDLV---SHKTRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKER 1021

Query: 994  IGLRLDV 1000
            I +++ V
Sbjct: 1022 IPVQIKV 1028