Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1048 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

 Score =  291 bits (745), Expect = 2e-82
 Identities = 304/1084 (28%), Positives = 488/1084 (45%), Gaps = 138/1084 (12%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L L L+      G  +IDFT+       LF I G TGAGK+++LDAIC ALY ET  
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 59   ----SERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107
                S+   D M  D A  E L EV  EFE+ G  Y+          QPD  +   R E 
Sbjct: 61   LSNVSQSQNDLMTRDTA--ECLAEV--EFEVKGEAYRAFWSQNRARNQPDGNLQVPRVE- 115

Query: 108  MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167
                      +A  +DG +++A+K     +    L GLD  +F + M+L QG+F   L A
Sbjct: 116  ----------LARCADG-KILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNA 164

Query: 168  NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227
              KER ++  +L  T++Y QI   +FE+    R E E+   Q  G    V L + EQ+Q+
Sbjct: 165  KPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASG----VTLLTPEQVQS 220

Query: 228  ELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQA--- 284
             LT    VLT  + QL   QQQ  ++        EL+Q+  R+QQ + +    +E+A   
Sbjct: 221  -LTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQ 279

Query: 285  ----THIEMLRQQRQQ----AQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKA 336
                +  +  R  R      A+ +A L  + QQ  +    LQ     +  + ++   A  
Sbjct: 280  LAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQST---MALRASIRHHAAK 336

Query: 337  QQQQAQQASQQASLACEEVPKL---NEQRITWQ-RAEQKLLAQENV---QQAVAKAEREL 389
            Q  + QQ  Q  +   +E  +    N +   W+ +  Q+   +E++   QQ +  AE++L
Sbjct: 337  QSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKL 396

Query: 390  QLATQNALNLQQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQS 449
                  A+ L   ++++   L  Q  E    ++ L  L  Q     + + Q+Q   +   
Sbjct: 397  NALA--AITLTLTADEVATALA-QHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQN-- 451

Query: 450  LLNELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPV 509
             + + QT + A L   +Q +  +TQ      T  + E    T  A    L   Q  PCP+
Sbjct: 452  -VTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQ--PCPL 508

Query: 510  CGSLEHPNKAQYSG-------------------------------DVVTKVQVEQARQQQ 538
            CGS  HP    Y                                 D +TK Q+++   + 
Sbjct: 509  CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITK-QLQRDENEA 567

Query: 539  QDWVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLN-ELIEQQQILHSDIAA 597
            Q   Q +Q     WQ          Q L  +   L  Q        L+ Q+  L   IAA
Sbjct: 568  QSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAA 627

Query: 598  LQQLNPDLLKRQIEEGEQRLAHT----KMTLEKQNQNQ------QQAWQTLAQLQAELAS 647
              Q      ++QIE+ +Q L  T     +TL ++++ +      QQ  Q+  Q Q EL +
Sbjct: 628  HNQQIIQY-QQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTA 686

Query: 648  LRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEA 707
            L+  I      L+TL  +        E+    E    E W Q  +Q  ++ +  Q   + 
Sbjct: 687  LQNRIQQLTPILETLPQSD-------ELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQ 739

Query: 708  HRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIE--RQIAQYEERSAMLS 765
               + +  ++  + +   L  S F D+ A+LAA + ++ +  +E  +Q  + + R A   
Sbjct: 740  DVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTL 799

Query: 766  GEQQALSRKLAEKNRPELE-PLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADL 824
              Q A +    +++RP+    L V V Q ++++A   Q   ++ +    +++  KQ AD 
Sbjct: 800  VTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADN 859

Query: 825  YQKNRALEAEYQVV-------GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMK 877
             Q+ + L  +   +       G L+ +   K G K    +F  G+ LD+++  A+Q+L +
Sbjct: 860  RQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDK--FRKFAQGLTLDNLVHLANQQLTR 917

Query: 878  MSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALGLSD 936
            +  GRYLL+RK   A       L++ V D++     RD  TLSGGESF+ +L+LAL LSD
Sbjct: 918  L-HGRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSD 969

Query: 937  VVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGL 996
            +V   S   R+D+LF+DEGFG+LD E+LD A+  L  L   G+TIG+ISHV  +KE+I +
Sbjct: 970  LV---SHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPV 1026

Query: 997  RLDV 1000
            ++ V
Sbjct: 1027 QIKV 1030