Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1224 a.a., exonuclease subunit SbcC from Erwinia tracheiphila SCR3

 Score =  211 bits (538), Expect = 2e-58
 Identities = 300/1238 (24%), Positives = 516/1238 (41%), Gaps = 268/1238 (21%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L L  +      G  +IDFT        LF I G TGAGK+++LDAIC ALY ET  
Sbjct: 1    MKILTLRFKNLNSLRGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 59   ----SERTGDQMRCDYAAPESLTEVIFEFE--------------------LAGARYQITR 94
                S+     M  D    + L EV FE +                    L   R ++ R
Sbjct: 61   LGKLSQTQNGLMTRD--TTDCLAEVEFEVKGEAWRAFWSQRRAHGAVNGNLKAPRVELAR 118

Query: 95   QPDQEIPKKRGE----------GMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMG 144
              D +I   + +          G+     + +++  +      +    N  A  + EL G
Sbjct: 119  CADNKIIADKVKDKLEMMAGLTGLDFGRFTKSMMLSQGQFAAFLNADANSRAGLLEELTG 178

Query: 145  LDV------------KQFRQVMVLPQGKFRELLTANSKEREQIFGQLF------------ 180
             ++            K  RQ +   + +   +   + ++R+ + GQLF            
Sbjct: 179  TEIYGRLSASVFERFKNIRQQLETLRARAGGMALLDEEQRKSLNGQLFSLVSDEQTLTDQ 238

Query: 181  -QTQL---------------YSQIERALFERAAGIRKEKEEFDQQIKG------------ 212
             Q QL                S  E+A  +  A   ++K + D+  +             
Sbjct: 239  HQRQLSLLQWQQQYQRARDAVSAAEQACQQAEAAWLEDKPQLDKLERAEPAEKLRPLWQQ 298

Query: 213  -TLSVVGLESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQ 271
             +L+   L++ +Q Q  LT              A+ +  D+ +  ++A  + ++  I   
Sbjct: 299  CSLNTQDLQALQQQQQRLTARWDQQRQQLETSSAQLKMQDDARRQHEAFRQQQETLITDS 358

Query: 272  QLVVE--IATHQEQATHI----------------EMLRQQRQQAQKAARLTAVHQQW--- 310
             L ++  IAT ++QA  +                ++L+ Q++QA+K A+   +HQQW   
Sbjct: 359  VLPLDNHIATLEQQAQTLTKEISEYQHSISQHREKLLKNQQEQAEKRAQ-QQLHQQWQQA 417

Query: 311  ---------------------HQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQAS 349
                                 HQ Q  L + +L++++Q  LL Q + Q+QQ +Q      
Sbjct: 418  NPQVGRWGESLPLWSARFEQHHQNQAILDKQQLQLKEQLQLLAQQQQQEQQLEQQVAPHR 477

Query: 350  LACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQASEKLEQE 409
            LA ++      +      A +K   Q  +Q  +A+  ++  L    AL + Q  + ++Q 
Sbjct: 478  LALQQASSHLAEAEKHHNALEKQHPQTQLQTQLARFGQQRPLRQTLALLIPQWQQVMQQR 537

Query: 410  L------QNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAR-EREQSLLN------ELQT 456
                   Q    + EQ  +QL  L        Q  Q V+ R E E+ + +      +L++
Sbjct: 538  QRALTRQQETHQQIEQAGQQLLTLRNDWKEKEQQWQDVEKRHELERRIADLEQYRTQLES 597

Query: 457  AQQALLRFEQQHHHI---QTQAEQA--------KLTADKLEFAWHTQRAAELALALTQNE 505
             Q   L    QH  +   QT +  A        K   D+L+     QR  +L    TQ E
Sbjct: 598  GQPCPLCGACQHPAVDEYQTISPSATAERLLKLKAVVDRLKDDGIAQRE-QLKNLKTQQE 656

Query: 506  PCPV----CGSLEHPNKAQYSGDVVTKVQVEQAR-------QQQQDWVQRQQEAFHAWQQ 554
                     G LE   ++Q+       VQ E A        +Q  DW+  QQ+  +  Q 
Sbjct: 657  KLQQELSENGQLETELRSQWQ-----LVQKELALDFTPEQWEQVTDWLTVQQQQENDAQA 711

Query: 555  QGFKTEQIAQNLTTLSSELTLQQVALLNELIEQQQI-------LHSDIAALQQLNPDLL- 606
            Q  + +Q AQ L       T  Q  L N+L++QQ++       L  +I+AL+Q   + + 
Sbjct: 712  QLLQRQQSAQQLQQAKDRFTQHQQEL-NDLLQQQELAGQQRLTLSQNISALEQQRTEQML 770

Query: 607  --KRQIEEGEQRLAHTKMTLEKQNQNQ------QQAWQTLAQLQAELASLRQEIPPELSD 658
              ++Q ++ +  L    + L  Q++++      +Q WQ    ++  L  L  ++    + 
Sbjct: 771  AAEKQHDQLQSTLTEVGLALPAQDEHESWLALRRQEWQQWQHVEQALTDLLPQLTALATQ 830

Query: 659  LDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQ----------FASVQAAYQAAIEAH 708
               L   +   Q ++  L++   TA +Q +  Q+Q           A VQ A +A  + H
Sbjct: 831  QQALNEQLASEQQRVTALEQ-RLTAGQQNLNEQRQQREALFGDRPIADVQQALRALSQQH 889

Query: 709  RES--------QRQQEETTSAWQQ------------------------GLLHSGFSDESA 736
             E         Q+Q+E+  +   Q                         L  S F+DE+ 
Sbjct: 890  TERSEILQQQWQQQKEQLNTLHGQLNSLTEQADALAQRLNDNRQMLADALATSDFTDEAD 949

Query: 737  YLAARLTDEA----IVNIERQIAQYEERSAMLSGEQQALSRKLAEKNRPELEPL------ 786
            ++AA L DEA    +  +++Q   + +++A+L  + Q +   LAE+ + + + L      
Sbjct: 950  FVAA-LLDEAQSSKLHALQKQHDSHRQQTAVLREQAQEI---LAEQQQQQPDDLPADPAT 1005

Query: 787  ---LVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGTLSD 843
                VK+   + +     Q   + Q   D  QR  +Q   L ++  A E + +    L+ 
Sbjct: 1006 LSETVKLLAEQLRENARQQGEVRQQLLSDEAQREQQQ--HLLRQIAAGEQQVEDWSYLNQ 1063

Query: 844  IANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLM 903
            +   K G K    +F  G+ LD+++  A+Q+L ++  GRY+L+RK +         L+L 
Sbjct: 1064 LIGSKEGDK--FRKFAQGLTLDNLVWLANQQLTRL-HGRYMLQRKSDEP-------LELQ 1113

Query: 904  VEDSYSGK-WRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPE 962
            V D++  +  RD  TLSGGESF+ +L+LAL LSD+V   S   R+++LF+DEGFG+LD E
Sbjct: 1114 VMDTWQAEALRDTRTLSGGESFLVSLALALALSDLV---SHKTRIESLFLDEGFGTLDAE 1170

Query: 963  SLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
            +LD A+  L  L   G+TIG+ISHV  +KE+I +++ V
Sbjct: 1171 TLDSALDALDALNASGKTIGVISHVEAMKERISVQIKV 1208