Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1043 a.a., exonuclease SbcC from Enterobacter asburiae PDN3

 Score =  297 bits (760), Expect = 3e-84
 Identities = 312/1080 (28%), Positives = 490/1080 (45%), Gaps = 135/1080 (12%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L L L+      G  +IDFT        LF I GATGAGK+++LDAIC ALY ET  
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGATGAGKTTLLDAICLALYHETPR 60

Query: 59   ----SERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107
                S+   D M  D A  E L EV  EFE+ G  Y+          QPD  +   R E 
Sbjct: 61   LQKVSQAQNDLMTRDTA--ECLAEV--EFEVKGTAYRAFWSQNRARNQPDGNLQAPRVE- 115

Query: 108  MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167
                      +A   DG +++A+K     +    L GLD  +F + M+L QG+F   L A
Sbjct: 116  ----------LARCEDG-KILADKVTDKLEQTAALTGLDYGRFTRSMLLSQGQFAAFLNA 164

Query: 168  NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227
               +R ++  +L  T++Y QI   +FE+    R   E+ + Q  G +    L SEEQ Q 
Sbjct: 165  KPSDRAELLEELTGTEIYGQISAMVFEKHKAARSVLEKCEAQAAGVV----LLSEEQ-QQ 219

Query: 228  ELTELAPVLTHAQSQLKAEQQ------QW----DETKAHYQAALELEQQFIRKQQLVV-- 275
            +L +    LT  +  L  +QQ      QW    DE     Q    ++QQ    QQ +   
Sbjct: 220  QLQQSLQALTDEEKTLLVQQQRQQKDFQWLTRHDELVLEQQRVTAMQQQ---AQQALTNA 276

Query: 276  --EIATHQEQATHIEMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQ 333
              E+A  Q      ++      Q ++ ARLT   Q+  +    LQ AK  +  +     Q
Sbjct: 277  APELAKLQLALPAAQLRPLWEHQQEQTARLTQTQQRIIEVNTRLQ-AKTALRARIRHTAQ 335

Query: 334  AKAQQQQAQQASQQASLACEEVPKLNEQRITWQRAEQKLLAQENVQQA-----VAKAERE 388
               QQ Q +  +    LA  E  +L  Q I   RA+   L ++  Q A     +++    
Sbjct: 336  RNHQQLQTELTALAQWLAENERYRLLGQEIAGWRAQFSQLNRDKTQLASLAAKMSELRNR 395

Query: 389  LQLATQNALNL--QQASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQARER 446
            L    +NAL L   + S  +EQ+ +++ L             +QK R+ Q  + VQ  E 
Sbjct: 396  LAEMPENALTLTADEVSAAMEQQSRSRTLRQRLTSLHARYQPLQK-RLRQSGESVQKAEA 454

Query: 447  EQSLLNELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEP 506
            +Q  LNE  T ++   + + QH+       + + T   LE              L   +P
Sbjct: 455  DQYKLNETLTLRRQQYKEKHQHYLDLKALCEREATIKDLE---------SYRSRLEAGKP 505

Query: 507  CPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNL 566
            CP+CGS EHP   QY    +T  Q  +    +++    ++E      Q    T+QI Q  
Sbjct: 506  CPLCGSSEHPAVEQYQSLELTDNQ-RRRDPLEKEVAALKEEGLLVLGQVNALTQQI-QRE 563

Query: 567  TTLSSELTLQQVALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMTLEK 626
            T  +  L+ +Q AL  E +E    L+  +   + + P + +++  E +      ++TL+ 
Sbjct: 564  TDEAQTLSQEQQALTKEWMEACTSLNIALNIQEDITPWMNEQEQYERQLYQLSQRLTLQN 623

Query: 627  Q--------NQNQQQAWQTLAQLQAELASLRQEIPPELSDLDTLRSA------------- 665
            Q         Q+QQQ       L++ L SL   +P + ++   L +              
Sbjct: 624  QLNDQEVQERQHQQQLTAARQALESTLLSLSLNVPEDGNEAAWLHAREAEFAQWQEKQTH 683

Query: 666  -------IGRVQNQIEIL-----QKAEHTAREQWVQAQKQFASVQAAYQAAIEAHRESQR 713
                   I  ++  ++ L     ++AE    + W     +  S+Q+   A  +     Q 
Sbjct: 684  HGVLLERINALKPLLDTLPETNGEEAEPAIPDGWRDVHDECVSLQSQLTAQQQQENLEQE 743

Query: 714  QQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYE---ERSAMLSGE-QQ 769
            + +++ + +   L  S F+D  A+LAA L D+AI  +E+     E   +++A L G+  Q
Sbjct: 744  RLQQSQTQFTAALSASCFADRDAFLAALLDDDAIRRLEQLKQSLENQIQQAAALCGQANQ 803

Query: 770  ALSRKLAEKNRPELEPLLVKVTQAE-EKMALALQAFTQHQSRMDGLQRVAKQLADLYQKN 828
             L   LA   RPE         Q++ +++A  L+  T HQ     +++  KQ +D  Q  
Sbjct: 804  QLQAHLAL--RPEGLDADAPALQSQLQQLAQRLRENTTHQGE---IRQQLKQDSDNRQHQ 858

Query: 829  RALEAEYQVV-------GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRG 881
             AL  + +         G L+ +    TG K    +F  G+ LD+++  A+Q+L ++  G
Sbjct: 859  LALMQQIEEAARQADDWGYLNALIGSSTGDK--FRKFAQGLTLDNLVWLANQQLNRL-HG 915

Query: 882  RYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALGLSDVVQA 940
            RYLL+RK   A       L+L V D++     RD  TLSGGESF+ +L+LAL LSD+V  
Sbjct: 916  RYLLQRKASDA-------LELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLV-- 966

Query: 941  YSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
             S   R+D+LF+DEGFG+LD E+LD A+  L  L   G+TIG+ISHV  +KE+I +++ V
Sbjct: 967  -SHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATGKTIGVISHVEAMKERIPVQIKV 1025