Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., exonuclease subunit SbcC from Escherichia coli ECRC62

 Score =  294 bits (752), Expect = 3e-83
 Identities = 308/1087 (28%), Positives = 494/1087 (45%), Gaps = 145/1087 (13%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
            M+ L L L+      G  +IDFT+       LF I G TGAGK+++LDAIC ALY ET  
Sbjct: 1    MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 59   ----SERTGDQMRCDYAAPESLTEVIFEFELAGARYQI-------TRQPDQEIPKKRGEG 107
                S+   D M  D A  E L EV  EFE+ G  Y+          QPD  +   R E 
Sbjct: 61   LSNVSQSQNDLMTRDTA--ECLAEV--EFEVKGEAYRAFWSQNRARNQPDGNLQVPRVE- 115

Query: 108  MTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTA 167
                      +A  +DG +++A+K     +    L GLD  +F + M+L QG+F   L A
Sbjct: 116  ----------LARCADG-KILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNA 164

Query: 168  NSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQT 227
              KER ++  +L  T++Y QI   +FE+    R E E+   Q  G    V L + EQ+Q+
Sbjct: 165  KPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASG----VALLTPEQVQS 220

Query: 228  ELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHI 287
             LT    VLT  + QL   QQQ  ++        EL+Q+  R+QQ + +    +E+A   
Sbjct: 221  -LTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA--- 276

Query: 288  EMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKA---------QQ 338
            +        AQ A  L    ++  +    L   + ++E+  T LQ   A          +
Sbjct: 277  QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHAAK 336

Query: 339  QQAQQASQQASLAC-----EEVPKLNEQRITWQ-RAEQKLLAQENV---QQAVAKAEREL 389
            Q A+   QQ SL       +   + N +   W+ +  Q+   +E++   QQ +  AE++L
Sbjct: 337  QSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKL 396

Query: 390  QLATQNALNLQQASEKLEQELQNQRLEWEQQQRQLTRLE----VQKARMNQLVQQVQARE 445
                  A+ L   ++++   L  Q  E    ++ L  L      Q+ R+ QL+  +Q   
Sbjct: 397  NALA--AITLTLTADEVATALA-QHAEQRPLRQHLVALHGQIVPQQKRLAQLMVTIQNVT 453

Query: 446  REQSLLNE-LQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQN 504
             EQ+  N  L   +Q      QQ   ++T  EQ +     LE     QRA      L   
Sbjct: 454  LEQTQRNAALSEMRQRYKEKTQQLADVKTICEQ-EARIKTLE----AQRAQ-----LQAG 503

Query: 505  EPCPVCGSLEHPNKAQYSG-------------------------------DVVTKVQVEQ 533
            +PCP+CGS  HP    Y                                 D +TK Q+++
Sbjct: 504  QPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTK-QLQR 562

Query: 534  ARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVALLN-ELIEQQQILH 592
               + Q   Q +Q     WQ          Q    +   L  Q        L+ Q+  L 
Sbjct: 563  DENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQ 622

Query: 593  SDIAALQQLNPDLLKRQIEEGEQRL--AHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQ 650
              IAA  Q      ++QIE+ +Q+L  A T   L    ++++++W    Q +A+    RQ
Sbjct: 623  GQIAAHNQQIIQY-QQQIEQRQQQLLTALTGYALTLPQEDEEESWLATRQQEAQSWQHRQ 681

Query: 651  EIPPELSDLDTLRSAIGRVQNQIEILQKA-------EHTAREQWVQAQKQFASVQAAYQA 703
                  ++L  L++ I ++   +E L ++       E    E W Q  +Q  ++ +  Q 
Sbjct: 682  ------NELTALQNRIHQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQT 735

Query: 704  AIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIE--RQIAQYEERS 761
              +    + +  ++  + +   L  S F D+ A+LAA + ++ +  +E  +Q  + + R 
Sbjct: 736  LQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQ 795

Query: 762  AMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQL 821
            A     Q A +    +++RP+   L V V Q ++++A   Q   ++ +    +++  KQ 
Sbjct: 796  AQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQD 855

Query: 822  ADLYQKNRAL-----EAEYQVV--GTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQR 874
            AD  Q+ + L     +   QV   G L+ +   K G K    +F  G+ LD+++  A+Q+
Sbjct: 856  ADNRQQQQTLLQQIAQMTQQVADWGYLNSLIGSKEGDK--FRKFAQGLTLDNLVHLANQQ 913

Query: 875  LMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSGKW-RDVATLSGGESFMAALSLALG 933
            L ++  GRYLL+RK   A       L++ V D++     RD  TLSGGESF+ +L+LAL 
Sbjct: 914  LTRL-HGRYLLQRKASEA-------LEVEVVDTWQADAVRDTRTLSGGESFLVSLALALA 965

Query: 934  LSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQ 993
            LSD+V   S   R+D+LF+DEGFG+LD E+LD A+  L  L   G+TIG+ISHV  +KE+
Sbjct: 966  LSDLV---SHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022

Query: 994  IGLRLDV 1000
            I +++ V
Sbjct: 1023 IPVQIKV 1029