Pairwise Alignments
Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056
Subject, 1227 a.a., AAA family ATPase from Dickeya dianthicola ME23
Score = 194 bits (493), Expect = 3e-53
Identities = 217/871 (24%), Positives = 381/871 (43%), Gaps = 142/871 (16%)
Query: 178 QLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLT 237
Q Q Q + Q + L E+ A + + E DQQ L + Q Q E A
Sbjct: 433 QFPQQQKWQQDLQVLQEKTAQQQIQAEYLDQQH------ASLAEKHQAQQSACERA---- 482
Query: 238 HAQSQLKAEQQQWDETKAHYQAALELEQQFIRK-------QQLVVEIATHQEQATHIEML 290
QL E Q DE Q +L QQ ++ QQL +A Q+ + +L
Sbjct: 483 ---RQLLTEHLQQDEQLEAEQPLADLRQQLAQRMAERPDRQQLATSVAVLQQLISQRTLL 539
Query: 291 RQQRQQAQKAARLTAVHQQWHQAQKNLQQA---------KLKVEQQQTLLQQAKAQQQQA 341
Q+ Q+ R+ A+ Q Q +++ Q+ + ++E L++ + Q Q
Sbjct: 540 EAQQLDTQR--RIQALEDQQTQQRQDYQRQADHLTDLDKRHELELHIVSLERERRQLQPG 597
Query: 342 QQASQQASLACEEVPKLNEQRITWQRAEQKLLAQE--NVQQAVAKAERELQLATQNALNL 399
++ S V + R + + L QE ++ V + E +LQL Q+
Sbjct: 598 KECPLCGSPHHPAVERYQALRPSETQLRLHALRQEVDALKAGVVQTETQLQLQKQHRQQQ 657
Query: 400 QQASEKLEQELQNQRLEWEQQQRQLTR-------------LEVQKARMNQLVQQVQARER 446
Q A + + ++ + RL+ + ++L +E AR L Q+ +RER
Sbjct: 658 QNALDGVRRDDASLRLQCQSVSKRLLVDFDPLQLPALHQWIEESDAREQSLQAQIASRER 717
Query: 447 EQSLLNE---LQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQ 503
Q + E L T+ Q LL Q + TQ +Q L A + E L L T+
Sbjct: 718 NQRHIQESKDLLTSAQQLLAQTVQQLELNTQ-QQTSLHASREEL--------RLLLEKTE 768
Query: 504 NEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIA 563
E + SL + T QQ+DW++++Q + WQ+ + Q
Sbjct: 769 RELQRLHDSLRQT--------LETFDLTAPTLAQQEDWLRQRQTEWLRWQESEHEQHQCQ 820
Query: 564 QNLTTLSSELTLQQVALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMT 623
L L +E+ + +Q+ +D A I+ +Q+LA T+ T
Sbjct: 821 PQLAALEAEI----------IASRQRQEETDAA-------------IKTYQQQLADTQRT 857
Query: 624 LEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTA 683
LE Q QQQ WQ + + + ++++ + L+ A
Sbjct: 858 LE---QAQQQRWQLMGN-------------------QAVNDVLKQLRHVSQALELENQQA 895
Query: 684 REQWVQAQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARLT 743
++QW Q+Q Q + + + + ++ ++ ++ + + + L +GF DE+A+ A L
Sbjct: 896 QQQWQQSQSQQSRLSGEIDSLEQQNQHAETTLQQLQAQFGEALAAAGFDDEAAFRHALLE 955
Query: 744 D---EAIVNIERQIAQYEER-SAMLSGEQQALSRKLAEKNRPELEPLLVK---VTQAEEK 796
+ + ++ ++ +++Q ++ A+L L + +A RPE P + + Q
Sbjct: 956 EAERQQLLTLKERLSQRRQQVEALLQQANSTLEQHMA--TRPESMPEGISDWDIRQLISG 1013
Query: 797 MALALQAFTQHQSRMDGLQRVAKQLADLYQKNRALEA------EYQVVGTLSDIANGKTG 850
+ ++A HQ + Q++A ++ LEA + G L+ + + G
Sbjct: 1014 LGDMVKAEAAHQGELR--QQLASDQQRRDKQRLLLEAIARGQQQCDDWGYLNQLIGSQKG 1071
Query: 851 AKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYSG 910
K RF G+ LD ++ A+++L ++ GRYLL+RK L+L V D++
Sbjct: 1072 DK--FRRFAQGLTLDHLVFLANRQLSRL-HGRYLLQRK-------ASDTLELQVADTWQA 1121
Query: 911 KW-RDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQ 969
RD TLSGGESF+ +L+LAL LSD+V + R+D+LF+DEGFG+LD E+LD A+
Sbjct: 1122 DAVRDTRTLSGGESFLVSLALALALSDLVSTKT---RIDSLFLDEGFGTLDGETLDTALD 1178
Query: 970 TLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
L +L G++IG+ISHV +K++I +++ V
Sbjct: 1179 VLDNLNASGKSIGVISHVEAMKDRIQVQIRV 1209
Score = 152 bits (384), Expect = 1e-40
Identities = 218/870 (25%), Positives = 364/870 (41%), Gaps = 136/870 (15%)
Query: 1 MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETTG 58
M+ L L L+ G +IDFT+ LF I G TGAGK+++LDAIC ALY +T
Sbjct: 1 MKILSLRLKNLNSLQGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR 60
Query: 59 SE--RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSAT 116
+ + +++ + A E L EV EFE+ Y+ + G K
Sbjct: 61 LKVGPSQNELMTRHTA-ECLAEV--EFEVKNVAYRAFWSQRRAHNSPEGNLQPPKVE--- 114
Query: 117 LVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIF 176
+AL +DG +++ +K N ++ GLD +F + M+L QG+F L A++ +R ++
Sbjct: 115 -LALCADG-KILTDKVNDKLTMTADITGLDFDRFTKSMMLSQGQFAAFLNADANQRAELL 172
Query: 177 GQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVL 236
+L T +Y QI +FE+ K+ + + ++ ++ + L S+EQ Q +L +
Sbjct: 173 EELTGTDIYGQISERVFEK----HKDAQNQLETLRAQVATLELLSDEQRQALEQQLDAIR 228
Query: 237 THAQS-QLKAEQ----QQWDETKAHYQAALELEQQFIRKQQLVVEIATHQ----EQATHI 287
QS L E+ Q+W +T +Q A + QQ Q+ V + + Q +++
Sbjct: 229 QQEQSLSLHREEVLGHQRWYDTLLQHQQAQQQAQQQCAAQEQVQQQSQPQLDKLQRSEPA 288
Query: 288 EMLRQQRQQAQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQ--------QQ 339
E LR + + ++A R + + + L A+ ++++QQ L K Q QQ
Sbjct: 289 EKLRPRFDERERALR------EKQRLTQQLNSARQQIDRQQDALNLLKVQLEKALSTRQQ 342
Query: 340 QAQQASQQASLACEEVPKLNEQRITW--QRAEQK------LLAQENVQQAVAKAERELQL 391
A+ QQ +L E + L+ T QRA+Q+ L Q+ + + K +R+ +
Sbjct: 343 HAEHRQQQETLINERILPLDHHIATQQAQRAQQQQALDSLLELQKTLIAGLTKLQRQQEQ 402
Query: 392 ATQNALNLQ--QASEKLEQELQNQRLEWEQQ--QRQLTRLEVQKARMNQLVQQVQARERE 447
Q ++ + Q L + W+ Q Q+Q + ++Q + QQ+QA +
Sbjct: 403 TRQQLAEIETYRRQHSRHQHLGSHIPLWQAQFPQQQKWQQDLQVLQEKTAQQQIQAEYLD 462
Query: 448 Q---SLLNELQTAQQALLRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQN 504
Q SL + Q Q A R Q Q EQ + Q A+L L Q
Sbjct: 463 QQHASLAEKHQAQQSACERARQLLTEHLQQDEQLEA----------EQPLADLRQQLAQR 512
Query: 505 EPCPVCGSLEHPNKAQYSGDVVTKVQVEQAR----QQQQDWVQRQQEAFHAWQQQGFKTE 560
E P++ Q + V Q+ R QQ D +R Q QQ +
Sbjct: 513 -------MAERPDRQQLATSVAVLQQLISQRTLLEAQQLDTQRRIQALEDQQTQQRQDYQ 565
Query: 561 QIAQNLTTLSS--ELTLQQVALLNELIEQQ---------QILHSDIAALQQLNPD----- 604
+ A +LT L EL L V+L E + Q H + Q L P
Sbjct: 566 RQADHLTDLDKRHELELHIVSLERERRQLQPGKECPLCGSPHHPAVERYQALRPSETQLR 625
Query: 605 --LLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPE----LSD 658
L+++++ + + T+ L+ Q Q++QQ L ++ + ASLR + L D
Sbjct: 626 LHALRQEVDALKAGVVQTETQLQLQKQHRQQQQNALDGVRRDDASLRLQCQSVSKRLLVD 685
Query: 659 LDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEAHRESQRQQEET 718
D L+ + + IE E AREQ +QAQ I + +QR +E+
Sbjct: 686 FDPLQ--LPALHQWIE-----ESDAREQSLQAQ-------------IASRERNQRHIQES 725
Query: 719 TSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLAEK 778
+ LL S + L A+ + +N ++Q + + R + R L EK
Sbjct: 726 -----KDLLTS-----AQQLLAQTVQQLELNTQQQTSLHASREEL---------RLLLEK 766
Query: 779 NRPELEPLLVKVTQAEEKMALALQAFTQHQ 808
EL+ L + Q E L Q +
Sbjct: 767 TERELQRLHDSLRQTLETFDLTAPTLAQQE 796