Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1007 a.a., ATPase involved in DNA repair from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  215 bits (548), Expect = 1e-59
 Identities = 258/1050 (24%), Positives = 456/1050 (43%), Gaps = 107/1050 (10%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTKLGDAPLFLINGATGAGKSSILDAICYALYGETTGSE 60
            M P+KL ++    +  ++ IDFT L  A LF I GA G+GKSSIL+AI  ALYG T   E
Sbjct: 1    MIPVKLEIEGLYSYKAKQTIDFTHLTGAGLFGIFGAVGSGKSSILEAILLALYGTT---E 57

Query: 61   RTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL 120
            R   +   +         +   FE    +   T      I K+  +       +      
Sbjct: 58   RLASKGEKNSMVNLQSPGIAIHFEFQAGKNNETSYKASYIAKRNTKNFDDVKPATHTFYE 117

Query: 121  KSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF 180
            KS    L      P+     EL+G+ +  FRQ +++PQGKFRE +    K+R ++  +LF
Sbjct: 118  KSSEGWL------PLEAKGEELVGMKMDHFRQTVIIPQGKFREFIEQKPKDRAEMMKELF 171

Query: 181  QTQLYSQIERALFERAAGIRKEKE-EFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHA 239
              + +    +   ++   I KEK+ + + Q++G  +     ++E LQT   +L   L   
Sbjct: 172  GLERFDLAGKT--KQLLSIEKEKKIKLETQLEGLAAF----TKEALQTSEGQLQQQL--- 222

Query: 240  QSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIEMLRQQRQQAQK 299
             +Q K E Q+  E +    ++L ++++  +  QL  ++A   +Q    +  ++  QQ QK
Sbjct: 223  -AQQKEEDQRLTEKEKQLNSSLAVKEKAEQLIQLKTQLAASDQQLPAFQEKQRLLQQYQK 281

Query: 300  A-ARLTAVHQQWHQAQKNLQQAKLKV------------EQQQTLLQQAKAQQQQAQQASQ 346
            A A +  +  Q+ + + +L++ ++ V            E ++   +  K  +  + +  +
Sbjct: 282  AQAYVKPLLDQFQELEIDLEKYRVSVADCERFKIRFEQEIEEKNTRYQKLYKDYSNKGEK 341

Query: 347  QAS----LACEEVPKLNEQRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQA 402
            +A     L  +E+ KL+ ++ +  +  Q+L  Q + QQ     E++ +L  Q    ++ A
Sbjct: 342  EARIRDLLQIKELNKLSSEKDSLAQQLQQLNLQNSAQQ-----EQKDKLTHQ----IEDA 392

Query: 403  SEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALL 462
             + LEQ    +     + +  L  L   + R   L  Q++    +   +   Q AQQ LL
Sbjct: 393  EKALEQIAAPELDHVSKMEAALLELRQLEDRSKLLSDQLKGLSAD---IASTQKAQQQLL 449

Query: 463  RFEQQH-----HHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPN 517
            +            IQT  EQ        E     Q     A  L   E CP+CG++EHP 
Sbjct: 450  QEAAMEAPTFPSAIQTTTEQLHQVQKDREHLLQQQGLFTYAHQLKPGEACPLCGAMEHPA 509

Query: 518  KAQYSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQ 577
              ++  D     + ++A Q+    ++  +    ++++     E   ++      E    Q
Sbjct: 510  PLEHHFDEEKLQKTDEAIQRFSQRLETLRSTQSSYEKLHLNMENAEKSHLEKQQEADQLQ 569

Query: 578  VALLNELIEQQQILHSDIAALQQLNPDLLKRQIEEGEQ---RLAHTKMTLEKQNQNQ--- 631
              +   L E      +D+A   Q   D L+R+    +Q    LA  K  L K  Q+    
Sbjct: 570  NRIQQLLKENGGAQEADLAQALQTAKDTLQREKNLQQQLKALLAEQKAFLTKAEQDLNRF 629

Query: 632  QQAWQTLAQLQAELASLRQEIP-PELSDLDTLRSA--------IGRVQNQIEILQKAEHT 682
            Q A Q +  LQ ++ +   EI  P+L  L+  RSA        I +V+  ++ L+     
Sbjct: 630  QAAEQEVKTLQTKIETKLAEINYPDL--LEKYRSASAAQIDEDISKVKRYLDDLEVNLPR 687

Query: 683  AREQWVQAQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAARL 742
            A++   +A++Q    Q    A ++ ++E  R  E  T          G +DES  LA   
Sbjct: 688  AQDALNEARQQ----QTTNLAHLKTYQE--RLAEVKTKL--------GKTDESLSLALAQ 733

Query: 743  TDEAIVNIERQIAQYEERSAMLSGEQQALSRK--LAEKNRPELEPLLVKVTQAEEKMALA 800
             D   +   + + +       +  E +A  R+  L       LE      T  +E+    
Sbjct: 734  HDFTGIQTVKDLLEKSLDQTKMEEEIKAFDRQRALMRDKIQALEAEEAVATFDQEQFTAV 793

Query: 801  LQAFTQHQSRMDGLQ-RVAKQLADLYQKNRALEAEYQVVGTLSDIANGKTGAK------- 852
              AF   ++ ++  Q RVA    ++   N  LE + ++      + N +T  K       
Sbjct: 794  QAAFQAAKTALEATQKRVALLQKEIDDINAKLEEKARLKKDFQSVENRETNLKELYGLFQ 853

Query: 853  -VSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSYS-G 910
                 ++V  + L +++  A+ R M++++    L+         V       V+D  + G
Sbjct: 854  GSGFVKYVSNIYLKELVQTANIRFMQLAKNSLTLE---------VDDSNTFWVKDHLNGG 904

Query: 911  KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQT 970
            K R + TLSGG++F A+L LAL L++ V+A +   +    F+DEGFG+LD  +L    +T
Sbjct: 905  KRRLLKTLSGGQTFQASLCLALALAEKVKALNRADQ-SFFFLDEGFGALDKNALRTVFET 963

Query: 971  LIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000
            L  L+   R +GIISHV EL+++IG+   V
Sbjct: 964  LKSLRHEKRIVGIISHVEELQQEIGVYAQV 993