Pairwise Alignments

Query, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

Subject, 1200 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score =  244 bits (623), Expect = 3e-68
 Identities = 303/1238 (24%), Positives = 528/1238 (42%), Gaps = 274/1238 (22%)

Query: 1    MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGET-- 56
            M+ ++L LQ     AG +EI+F    L  A L  I GATGAGKS++LDA+C AL+ +   
Sbjct: 1    MKIVRLKLQNLASLAGEQEINFEADPLQHAGLIAITGATGAGKSTLLDAMCLALFNKIPR 60

Query: 57   --TGSERTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQ------EIPKKRGEGM 108
              T   +  D    D     +L  +      A +  +   Q  +      E+ + RG   
Sbjct: 61   LKTHEGKLKDVSGQDVQIDSTLNILRRGTAHAYSELEFIAQNQKRYIARWELKRARGHAE 120

Query: 109  TKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTAN 168
             K       +   +DGN ++ +K     K V+EL+GL  +QF + ++L Q +    L A 
Sbjct: 121  GKLQAVQRALVCVTDGN-MLTDKAKECDKQVLELIGLSFEQFTRAVLLAQSEVGAFLKAK 179

Query: 169  SKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTE 228
              ER  +   L  + ++S + +A FER   +R ++E+ ++ I G + ++  E   QL+  
Sbjct: 180  DNERADLLEYLTNSNIFSLVGKAAFERTKMVRVQREKLNELI-GHVELLSTEQMAQLE-- 236

Query: 229  LTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQFIRKQQLV-VEIATHQE----Q 283
                         Q KA QQQ  + + H Q  L  E Q+ +   L+  +I   QE    Q
Sbjct: 237  ------------DQYKARQQQVQQLEQHRQI-LRNELQWHKSHDLLYTQIQAKQEFYQVQ 283

Query: 284  ATHIEMLRQQRQQAQKAARLTAVHQ---QWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQ 340
                + L +QRQ+ Q+  +  ++     Q  + ++ LQ  + ++ Q Q L QQ   Q Q 
Sbjct: 284  LDANQKLGEQRQRLQQLEQFASIRPILLQQKRCEQQLQNLEKQISQHQQLFQQVCEQYQA 343

Query: 341  AQQASQQASLACEE--------VPKLNE-------------------------------Q 361
            AQ++ Q A  A E          P LN+                               Q
Sbjct: 344  AQKSCQAARTAVENEKLRQNQLAPYLNQAKQFLDQRKLIESQYTQVRNKLKEKTAEQQQQ 403

Query: 362  RITWQRAEQKLLAQENVQQA----------------------------VAKAERELQLAT 393
                Q+A+Q+    EN+QQ                             +A+A++  +L T
Sbjct: 404  LEQLQQAQQQYQQLENIQQQLQQQLAQSQQLCGFDSEPQASLQHLKAYIAQAQQASELYT 463

Query: 394  QNAL-NLQQASEKLEQEL--------------QNQRLEWEQQQRQLTRLEVQKARMNQL- 437
            Q+ + +LQ   + +EQ+L              Q  R  ++Q+++QL R+   +   +QL 
Sbjct: 464  QDQIIHLQIQQDSIEQQLHKLVQHAGDANQLEQKLRDLYQQREQQLERIYQFEQLQHQLE 523

Query: 438  ---VQQVQAREREQS---LLNELQTAQQALLRFEQQHHHIQTQAE--QAKLTADKLEFAW 489
               +  ++ +  +Q+   L +E+Q    A+L  +  + H + + E  Q +L   +L F+ 
Sbjct: 524  RWQIHYIEHQSLDQNIHQLKSEIQELHNAMLEQQSAYEHDKKERELLQKQLQQQRLLFS- 582

Query: 490  HTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQDWVQRQQEAF 549
              +   +L  AL  +EPC VCGS +HP + Q    ++ K  +    QQ+++++Q++QEA 
Sbjct: 583  --ENIEQLRAALQPDEPCMVCGSQQHPYREQQH--LLEKSLLAIQEQQEKNYLQKEQEAQ 638

Query: 550  HAW------------------QQQGFKTEQIAQNLTTLSSELT----------------- 574
            + W                  QQQ +  EQI Q    L  + +                 
Sbjct: 639  NQWLAARQQYLKQETVLSHLQQQQQYSLEQIQQLQQQLQHKYSFSGLELLWEQPPEQLLL 698

Query: 575  ----LQQVAL-------------------LNELIEQQQILHSDIAA---LQQLNPDLLKR 608
                LQQV L                    NEL+ Q + L +       LQQL   +LK+
Sbjct: 699  KLGELQQVQLKVREQLDFNITETQKTQSQYNELVRQLEKLRAQCIRAQQLQQLATPILKK 758

Query: 609  ------------QIEEGE-------------QRLAHTKMTLEKQN---QNQQQAWQTL-- 638
                         ++E +             ++L   K ++E+ N   Q QQ  +Q L  
Sbjct: 759  LPSSQHSDWHDNSLQEAQHIYQVFQNRLLQLEQLNTHKGSVEQLNLKLQPQQLQYQYLNT 818

Query: 639  --AQLQAELASLRQEIPPELSDLDTLRSAIG-----RVQNQIEILQKAEHTAREQWVQAQ 691
               QL+ EL  L+Q+    ++ +  L   +      + Q+ ++ L +      +  ++ Q
Sbjct: 819  QIVQLEQELEQLKQQGLDNVTQVKELTLKVAGQTYEQAQHWLDDLTQQLSILEQSCLEKQ 878

Query: 692  KQFASVQAAYQ------AAIEAHRESQRQQEETTSAWQQGLL--HSGFSDESAYLAARLT 743
            + F  +Q  YQ      +  +A R+  +Q+     A  Q  L  H  +S E       L 
Sbjct: 879  QYFEGLQQNYQQQQSKISQFQATRQHVQQEYTNIYAQVQHWLNDHPDYSPELIEFLV-LQ 937

Query: 744  DEAIVNIERQIAQYEERS-----AMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMA 798
            D       RQ+ Q  +R        L+  Q+   + LA K   E E L   +   E ++ 
Sbjct: 938  DATEEQRIRQLIQANDRGLSEAKTALNTLQEQFEQHLATKPAHEFEQLQNLLENLEIQLE 997

Query: 799  LALQAFTQHQSRMD-------GLQRVAKQLADLYQKNRALEAEYQVVGTLSDIANGKTGA 851
               Q   Q +++++         Q+  KQ+  + Q+    E  +  +  L   A+G    
Sbjct: 998  HTYQERDQLRTKLEIQQHNLHKQQQFQKQIVQVQQE----EYRWSRISELIGSADGARFK 1053

Query: 852  KVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGLDLMVEDSY-SG 910
            K++    +      D+L++ + + ++    RY L+R E+         L L + D + +G
Sbjct: 1054 KLAQEHHL------DILVEYANQQLQPLAPRYQLQRIED--------SLGLAIIDHHMNG 1099

Query: 911  KWRDVATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQT 970
            + R V +LSGGE+F+ +L+LAL ++++    SG +++++LFIDEGFG+LDP SL + +  
Sbjct: 1100 EVRPVLSLSGGETFLVSLALALAIANMA---SGSMKIESLFIDEGFGTLDPASLHVVMDA 1156

Query: 971  LIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGST 1008
            L  LQ  GR + +ISHV E+ E+I +++ V A   G++
Sbjct: 1157 LDRLQGQGRKVTLISHVQEMHERIPIQIQVKAVGSGAS 1194