Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., exonuclease SbcD from Pseudomonas simiae WCS417

 Score =  122 bits (307), Expect = 1e-32
 Identities = 108/343 (31%), Positives = 163/343 (47%), Gaps = 37/343 (10%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+  HTSDWHLG+  H      + +  L  L+  L+ +  D +++AGDI+D   PP  A 
Sbjct: 1   MRLFHTSDWHLGQNLHGQERDFEHACFLEWLLGQLKTHLPDVLLIAGDIFDTVNPPLKAQ 60

Query: 61  D-LLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFA----------DF 109
           + L D ++S      K  ++MI GNHD   R+   A  M+    H             D 
Sbjct: 61  ERLYDFIISAHEQNPKLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDGQLDA 120

Query: 110 EQMMQPLVLHSPQA-GEVAFW--GMPYHDPELV--RHYYHNDITTHDAAHQFLCESILAQ 164
           E+++ PL    P A G++A W   +P+  P  V   H   + +      H++L  +  A+
Sbjct: 121 ERLLIPL----PDAKGKIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIAAANAK 176

Query: 165 RNPSQRHVLISHCFVDGAMESE-SERPLSIGGSDRVDHRHF-LPFDYVALGHLHQPQ-MK 221
           R   Q  + ISH  + G   SE SER L IG ++ +    F     YVALGHLH+PQ + 
Sbjct: 177 RKKGQALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFDRSVAYVALGHLHKPQKVN 236

Query: 222 GAEHIRYSGSLMKYSFGE---QHQNKGATLVELGQQGFISATHIPLIAPHQM---RIIEG 275
           G E IRYSGS +  SF E   +HQ     ++++  QG    +  PL+ P  +   R+   
Sbjct: 237 GEERIRYSGSPIPLSFSEIGYKHQ-----ILDVTFQGQCLVSVEPLLIPRSVDLQRLEAA 291

Query: 276 ELEAILAAGATDPQADDYLLVRLLDKHAILDPMEKLRQVYPNV 318
            L  IL A A  P  D   L+    +H  L+   +L +  P++
Sbjct: 292 PLADILKALAELPDID---LLAETQRHPWLEVRVRLDEPQPDL 331