Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Exonuclease SbcD from Pseudomonas putida KT2440

 Score =  122 bits (305), Expect = 2e-32
 Identities = 109/340 (32%), Positives = 154/340 (45%), Gaps = 34/340 (10%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+  HTSDWHLG+  H      + +  L  L+  LR    DA+++AGDI+D   PP  A 
Sbjct: 1   MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ 60

Query: 61  D-LLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFA----------DF 109
           + L D +V     + K  ++MI GNHD   R+   A  M+    H             D 
Sbjct: 61  ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEGQLDA 120

Query: 110 EQMMQPLVLHSPQAGEVAFW--GMPYHDPELVRHYYHND--ITTHDAAHQFLCESILAQR 165
           E+++ PL   +   G+VA W   +P+  P  V      D  +      HQ L  + L +R
Sbjct: 121 ERLLIPL---TNGRGKVAAWCLALPFLRPAEVTGPQLGDDYLQGITQVHQQLIAAALKKR 177

Query: 166 NPSQRHVLISHC-FVDGAMESESERPLSIGGSDRVDHRHF-LPFDYVALGHLHQPQ-MKG 222
              Q  + ISH     GA+  +SER L IG ++ +  + F     YVALGHLH+PQ +  
Sbjct: 178 KKDQALIAISHAHMAGGAVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKPQKVNR 237

Query: 223 AEHIRYSGSLMKYSFGEQHQNKGATLVELGQQGFISATHIPL-IAPHQMRIIEGELEAIL 281
            E IRYSGS +  SF E +       VEL   G +S    P+  A    R+    L  +L
Sbjct: 238 EERIRYSGSPIPLSFAEINYPHQVLEVELDGNGLVSVEPRPVPRAVALQRVGPAPLGELL 297

Query: 282 AAGA--------TDPQADDYLLVRLLDKHAILDPMEKLRQ 313
              A         DP    +L VR+L    + +P   LRQ
Sbjct: 298 QQLADLPVVDLLEDPNRQPWLEVRVL----LDEPQPDLRQ 333