Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Exonuclease SbcD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  115 bits (288), Expect = 2e-30
 Identities = 87/295 (29%), Positives = 138/295 (46%), Gaps = 21/295 (7%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+ LHTSDWHLG+ F+  S   +  A L  L++  + + VDA+IVAGDI+D   PP+ A 
Sbjct: 1   MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAIIVAGDIFDTGSPPSYAR 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
           +L +  V V   +    L+++ GNHD    L  +   +      + A       P +LH 
Sbjct: 61  ELYNRFV-VNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNTTVIA--SAGYAPRLLHR 117

Query: 121 PQAGEVA-FWGMPYHDP-------------ELVRHYYHNDITTHDAAHQFLCESILAQRN 166
                 A    +P+  P             E  +   H     +   +Q  C+    ++ 
Sbjct: 118 RDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADYYQQQYQEACQLRGERKL 177

Query: 167 PSQRHVLISHCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQ-MKGAEH 225
           P    +   H    GA +S++ R + IG  D    +HF P DY+ALGH+H+ Q + G EH
Sbjct: 178 PV---IATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYIALGHIHRAQCVGGTEH 234

Query: 226 IRYSGSLMKYSFGEQHQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAI 280
           IRY GS +  SF E  ++K   LV   Q  + S   + +     + +++G+L +I
Sbjct: 235 IRYCGSPIALSFDECGKSKCVHLVTFEQGKWQSTESLAVPVTQPLAVLKGDLASI 289