Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., exonuclease, dsDNA, ATP-dependent (NCBI) from Escherichia coli BW25113

 Score =  112 bits (280), Expect = 2e-29
 Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 13/293 (4%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+ LHTSDWHLG+ F+  S   +  A L  L++  + + VDA+IVAGD++D   PP+ A 
Sbjct: 1   MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYAR 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFADFEQMMQPLVLHS 120
            L +  V V   +    L+++ GNHD    L  +   M      + A      Q L    
Sbjct: 61  TLYNRFV-VNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRD 119

Query: 121 PQAGEVAFWGMPYHDP----------ELVRHYYHNDITTHDAAHQFLCESILAQRNPSQR 170
              G V    +P+  P            +    H      D   Q   ++   + +    
Sbjct: 120 GTPGAV-LCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLP 178

Query: 171 HVLISHCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLHQPQ-MKGAEHIRYS 229
            +   H    GA +S++ R + IG  D    ++F P DY+ALGH+H+ Q + G EH+RY 
Sbjct: 179 IIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYC 238

Query: 230 GSLMKYSFGEQHQNKGATLVELGQQGFISATHIPLIAPHQMRIIEGELEAILA 282
           GS +  SF E  ++K   LV        S  ++ +     M +++G+L +I A
Sbjct: 239 GSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITA 291