Pairwise Alignments

Query, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., exonuclease subunit SbcD from Erwinia tracheiphila SCR3

 Score =  117 bits (294), Expect = 4e-31
 Identities = 98/307 (31%), Positives = 144/307 (46%), Gaps = 39/307 (12%)

Query: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60
           M+ +HT+DWHLG+ F+  S   +  A L  L+  + +   DA+IVAGDI+D   PP+ A 
Sbjct: 1   MRIIHTADWHLGQFFYTKSRAAEHQAFLDWLLAQVTEQQADAIIVAGDIFDTGSPPSYAR 60

Query: 61  DLLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMK--NSGLHIFADFEQMMQPLVL 118
           +LL+  + V        L+++ GNHD    L  +   +   N+ + + A  EQ  Q ++ 
Sbjct: 61  ELLNRFI-VRLQPTGCQLVLLGGNHDSVAVLNESRHLLACLNTTV-VAAASEQPDQQILR 118

Query: 119 HSPQAGEVA--FWGMPYHDPELVRHYYHNDITTHDAA------HQFLCESILAQRNPSQR 170
            + + G+ A     +P+  P         DITT  A        Q L E+I        +
Sbjct: 119 LNNRHGQPAALLCAIPFLRP--------RDITTSQAGLSGLEKQQSLLEAITTHYQRCWQ 170

Query: 171 HVL--------------ISHCFVDGAMESESERPLSIGGSDRVDHRHFLPFDYVALGHLH 216
           H L                H    G  +S+S R + IG  D    + F P DY+ALGH+H
Sbjct: 171 HALQQREEMKLSVPVIATGHLTTVGVTQSDSVRDIYIGTLDAFPAQAFPPADYIALGHIH 230

Query: 217 QPQ-MKGAEHIRYSGSLMKYSFGEQHQNKGATLVELGQQGF--ISATHIPLIAPHQMRII 273
           + Q + G EHIRYSGS +  SF E  + K   LVE        +    IP+  P  M+II
Sbjct: 231 RAQRIAGTEHIRYSGSPIPLSFDELGKEKSVFLVEFAGDKLHRVEPLVIPMFQP--MQII 288

Query: 274 EGELEAI 280
           +G LE I
Sbjct: 289 KGSLEEI 295