Pairwise Alignments

Query, 326 a.a., catabolite repressor/activator from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

 Score = 86.7 bits (213), Expect = 8e-22
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 9/256 (3%)

Query: 2   TLDEIAKLAGVSKTTASYVINGKAQKYRISEKTQHKVMAVVEQYNFRPDHAASALRAGNS 61
           TL ++A+LAGVS  T S  ++   +   + E+T  +V   + + N+ P  AA AL +G +
Sbjct: 8   TLQDVAQLAGVSTATVSRALS---RPDLVQEETLARVSDAISRLNYVPGGAARALASGKT 64

Query: 62  RSFGLIIPDLENTSYARLAKLLEQNSRQAGYQILIACSDDDPQIEMAAAEALVSRRIDAL 121
            + G ++P L++  +AR  + ++      GYQ+L+A  D  P  E AA  A+++R +DAL
Sbjct: 65  LTIGAVVPTLDHAIFARAIQAMQTELAGNGYQLLVAAHDYAPAQEAAAVRAMLARGVDAL 124

Query: 122 FVASGIPSASEYYLKLQQSGTPVIAIDRALDDEYFSCVISEDFGAAFELTRSVLTQDVHS 181
            V  G     E +  L  +  PV+       D     +  ++  A + +   +L      
Sbjct: 125 MVV-GADHLEETWALLTTASVPVVL--SWSFDARLPAIGFDNEKAGWLIADHLLDLGHRR 181

Query: 182 VGLVGALPELN-VSREREQGFAMAVKQRG--LPTTLGYGEHFNREEGRKVFAKWVANDQL 238
            G++      N  +R R  G   A+  RG  LP++      F    GR   A+ +A    
Sbjct: 182 FGMISGFTHANDRARSRVAGVRAALAARGLELPSSCVVEAPFTLAGGRAGLAELMARATP 241

Query: 239 PDAVVATSYTLLEGIL 254
           P AVV  +  L  G L
Sbjct: 242 PTAVVCGNDLLAAGAL 257