Pairwise Alignments

Query, 326 a.a., catabolite repressor/activator from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., HTH-type transcriptional repressor CytR from Xanthobacter sp. DMC5

 Score =  103 bits (256), Expect = 9e-27
 Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 9/329 (2%)

Query: 2   TLDEIAKLAGVSKTTASYVINGKAQKYRISEKTQHKVMAVVEQYNFRPDHAASALRAGNS 61
           TL  +A   GV ++T +  ++ + Q  RIS     KV A   +  +RPD  AS+LR G S
Sbjct: 16  TLQSVADAVGVHRSTVARALDPE-QSRRISADVVEKVQAEARRQGYRPDAVASSLRTGRS 74

Query: 62  RSFGLIIPDLENTSYARLAKLLEQNSRQAGYQILIACSDDDPQIEMAAAEALVSRRIDAL 121
           R  G+++PDL N  +A +   +       GY +++A S +D   +    E L++RR+D L
Sbjct: 75  RLIGVVVPDLANPVFAPILGGIGATLAARGYSMMVADSGEDEAGQADIVEKLIARRVDGL 134

Query: 122 FVASGIPSASEYYLKLQQSGTPVIAIDRALDDEYFSCVISEDFGAAFELTRSVLTQDVHS 181
            +A+     +   L L ++G P + ++R  D    S V+S+D G        +       
Sbjct: 135 VLATAKRDDATVSLCL-KAGVPTVLVNRGEDGLRASTVVSDDTGGIAVAVAHLAGLGHRR 193

Query: 182 VGLVGALPELNVSREREQGFAMAVKQRGLPT-TLGYGEHFNREEGRKVFAKWVANDQLPD 240
           +G +     L+    R +GFA A+   GLP   +     +NRE GR   A+ +  D+ PD
Sbjct: 194 IGHLAGPERLSTGVLRRRGFADAMAAAGLPADAVTTATAYNREAGRVAAAELL--DRWPD 251

Query: 241 --AVVATSYTLLEGILDVLLEQP-ELMQKVRLATFGDNRLLDFLPIRVNSLPQQFELIAD 297
             A+ A++  +  G      ++   + Q + +    D  L+D +   + ++    E +  
Sbjct: 252 ITAIAASNDLIALGAYQEAQQRGLRIPQDLSIVGHNDMPLVDMVAPPLTTVRIGHEAMGA 311

Query: 298 SALALALNASAK-RYQTGIELIPRQLKVR 325
            A ++ L+  A+      + L+P +L  R
Sbjct: 312 RAASILLDQIAQPETPPTLALVPARLIAR 340