Pairwise Alignments

Query, 326 a.a., catabolite repressor/activator from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  110 bits (275), Expect = 5e-29
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 6/317 (1%)

Query: 2   TLDEIAKLAGVSKTTASYVINGKAQKYRISEKTQHKVMAVVEQYNFRPDHAASALRAGNS 61
           T+ ++A LAG+S TT S+V+N   +   +SE+ + KV A + + ++ P   A +L+A ++
Sbjct: 3   TIKDVAALAGISYTTVSHVLN---KTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARST 59

Query: 62  RSFGLIIPDLENTSYARLAKLLEQNSRQAGYQILIACSDDDPQIEMAAAEALVSRRIDAL 121
            + GL++P+  N  +A LA+ +E    + GY +++  SDD+PQ + +    L+ +RID L
Sbjct: 60  ATIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGL 119

Query: 122 FVASGIPSASEYYLKLQQSGTPVIAIDRALDDEYFSCVISEDFGAAFELTRSVLTQDVHS 181
            VAS +    +    L    TP++ +DR L+      V  +    A+  TR +L      
Sbjct: 120 VVAS-VGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRD 178

Query: 182 VGLVGALPELNVSREREQGFAMAVKQRGLPTTLGYGEHFN-REEGRKVFAKWVANDQLPD 240
           V  +G   E  V++ R  GF  A+ + G P       H +    G    A  V   + P 
Sbjct: 179 VAYIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGKRPS 238

Query: 241 AVVATSYTLLEGILDVLLEQP-ELMQKVRLATFGDNRLLDFLPIRVNSLPQQFELIADSA 299
           A+ A +  +  G+L    E+   +  ++ +  F D  L  ++   + ++ Q    + +SA
Sbjct: 239 AIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESA 298

Query: 300 LALALNASAKRYQTGIE 316
            +L L   A   Q   E
Sbjct: 299 ASLLLTRIATPRQGAAE 315