Pairwise Alignments

Query, 326 a.a., catabolite repressor/activator from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) from Escherichia coli BW25113

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 71/332 (21%), Positives = 150/332 (45%), Gaps = 11/332 (3%)

Query: 2   TLDEIAKLAGVSKTTASYVINGKAQKYR-ISEKTQHKVMAVVEQYNFRPDHAASALRAGN 60
           T+ ++AK A VS TT S+VIN    K R ++E+T++ V A +++ ++ P   A +L+  +
Sbjct: 3   TIKDVAKRANVSTTTVSHVIN----KTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNH 58

Query: 61  SRSFGLIIPDLENTSYARLAKLLEQNSRQAGYQILIACSDDDPQIEMAAAEALVSRRIDA 120
           ++S GL+    E   +A + + +E+N  Q GY +++  + ++ + + A    +  +R+D 
Sbjct: 59  TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDG 118

Query: 121 LFVASGIPSASEYYLKLQQSGTPVIAID-RALDDEYFSCVISEDFGAAFELTRSVLTQDV 179
           L V           +  +    P++ +D      ++   VI   F   +   R ++ +  
Sbjct: 119 LLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGH 178

Query: 180 HSVGLVGALPELNVSREREQGFAMAVKQR--GLPTTLGYGEHFNREEGRKVFAKWVANDQ 237
             +G++    E N    R  GF  A+++    +P +      F  E G +   + ++   
Sbjct: 179 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPH 238

Query: 238 LPDAVVATSYTLLEGILDVLLEQP-ELMQKVRLATFGDNRLLDFLPIRVNSLPQQFELIA 296
            P AV      +  G L    E    + Q V L  + + R   +    + ++ Q  + + 
Sbjct: 239 RPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLG 298

Query: 297 DSALALALN--ASAKRYQTGIELIPRQLKVRT 326
           ++A  + L+   + +     IE+ PR ++ R+
Sbjct: 299 ETAFNMLLDRIVNKREEPQSIEVHPRLIERRS 330