Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., Mobile element protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  273 bits (697), Expect = 6e-78
 Identities = 138/305 (45%), Positives = 198/305 (64%), Gaps = 13/305 (4%)

Query: 12  FSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETMFRIHCMQQWYS 71
           +   R+ T+++ FLA ME+++PW +L +VIEP YPKAGNGR P  LE M R++ +Q W++
Sbjct: 27  YEQYRKLTKRDTFLATMEQIVPWQELCSVIEPHYPKAGNGRPPIGLERMLRMYFVQHWFN 86

Query: 72  LSDEAMEDALYEIASMRLFAHLSLDRA-IPDRTTIMNFRHLLEQHQLGRSVFEPINQWLS 130
           L+DEA E+AL +  ++R F  + L R  +PD TT++ FR LLE+H+LG ++F  + + L 
Sbjct: 87  LADEACEEALLDSTALRRFVGIDLGRERVPDGTTLLKFRRLLEKHKLGEALFAKVGEVLQ 146

Query: 131 ERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGVDAKSGLT 190
            RG+ +  GT+VDATII APSSTKN   QRDPEMHQT+KG +W+FGMK HIGVD+++GL 
Sbjct: 147 ARGMKVGTGTIVDATIIGAPSSTKNADKQRDPEMHQTRKGQQWYFGMKMHIGVDSRTGLA 206

Query: 191 HTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELK---GADVDWLIAERPGK 247
           H+ V TAAN HD + L  LLHG+E+ V GD+ Y       E K     D       R G+
Sbjct: 207 HSAVVTAANVHDKHPLPELLHGNEQRVYGDSAYASQRALIESKAPQAKDFTNQRVRRDGE 266

Query: 248 VRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKNDNQLAMLF 307
           +  +++    N         K+ +RA+VEH F ++K  +GF K RY+GL KN  +  ++ 
Sbjct: 267 IDEVERSKNHN---------KSKVRARVEHVFAVVKRLWGFAKVRYRGLAKNATRSFVVL 317

Query: 308 TLANL 312
            LAN+
Sbjct: 318 GLANI 322