Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., Mobile element protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  335 bits (860), Expect = 7e-97
 Identities = 168/323 (52%), Positives = 227/323 (70%), Gaps = 3/323 (0%)

Query: 5   LTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAG--NGRRPYPLETMFR 62
           ++ A+  F  K ++TRK  FL  M  ++PW++L+A+I P  P  G   GR P+ +ET+ R
Sbjct: 1   MSLAESGFERKTKRTRKREFLDEMNLVVPWAELVALIAPHAPAPGLKGGRPPFAVETLLR 60

Query: 63  IHCMQQWYSLSDEAMEDALYEIASMRLFAHLSL-DRAIPDRTTIMNFRHLLEQHQLGRSV 121
           IH +QQW++LSD AME+ALY+    R FA L + +  +PD +TI+ FRHLLE++ L   +
Sbjct: 61  IHFLQQWFNLSDPAMEEALYDTPMFREFAGLDMGEDNVPDESTILRFRHLLEKNNLSLQL 120

Query: 122 FEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHI 181
              +N  L+ +G+L+K GT+VDAT+I APSSTKN +  RDPEMHQT+KGN+WHFGMKAHI
Sbjct: 121 LATVNATLTAKGLLLKSGTVVDATLIAAPSSTKNNSGGRDPEMHQTRKGNQWHFGMKAHI 180

Query: 182 GVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLI 241
           GVDA SGL HT+V TAAN +D+ Q S L+HG+E  V  DAGYQG  KR+E +  + +W +
Sbjct: 181 GVDADSGLVHTVVGTAANVNDVTQASALVHGEEADVFADAGYQGVSKREEAQRIEANWHV 240

Query: 242 AERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKNDN 301
           A RPGK +AL K      V   +E++KASIRAKVEHPFR+IK QFG +K RY+GL KN  
Sbjct: 241 AMRPGKRKALDKVTPMGAVLDKLEHVKASIRAKVEHPFRVIKRQFGHVKVRYRGLAKNTA 300

Query: 302 QLAMLFTLANLVKVDQLIRRQAR 324
           QL  LF L+NL  V + + ++AR
Sbjct: 301 QLHTLFALSNLWMVRRTLLKEAR 323