Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., IS5-like element ISKpn26 family transposase from Escherichia coli ECRC62

 Score =  555 bits (1429), Expect = e-163
 Identities = 267/325 (82%), Positives = 295/325 (90%)

Query: 1   MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETM 60
           MSHQLTFAD EFS KRRQTRKE+FL+RME++LPW  + AVIEPFYPKAGNGRRPYPLETM
Sbjct: 1   MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETM 60

Query: 61  FRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRS 120
            RIHCMQ WY+LSD AMEDALYEIASMRLFA LSLD A+PDRTTIMNFRHLLEQHQL R 
Sbjct: 61  LRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQ 120

Query: 121 VFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAH 180
           +F+ IN+WL+E GV+M QGTLVDATIIEAPSSTKNK  QRDPEMHQTKKGN+WHFGMKAH
Sbjct: 121 LFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAH 180

Query: 181 IGVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           IGVDAKSGLTH+LVTTAANEHDLNQL NLLHG+E+FVS DAGYQGA +R+EL   DVDWL
Sbjct: 181 IGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWL 240

Query: 241 IAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300
           IAERPGKV+ LK+HPRKNK AI+IEY+KASIRA+VEHPFRIIK QFGF+KARYK L+KND
Sbjct: 241 IAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKRLLKND 300

Query: 301 NQLAMLFTLANLVKVDQLIRRQARS 325
           NQLAMLFTLANL +VDQ+IR+  RS
Sbjct: 301 NQLAMLFTLANLFRVDQMIRQWERS 325